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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.6 nTPM
HPA:54.6 nTPM
GTEx:53.6 nTPM
FANTOM5:49.4 Scaled Tags Per Million
Pig:32.5 nTPM
Mouse:71.0 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.8
2411 Female, age 72, unknown 54.7
1870 Female, age 42, unknown 54.1
1833 Male, age 53, unknown 52.4
1827 Male, age 72, unknown 52.1
2019 Male, age 18, unknown 52.0
2586 Male, age 75, left hemisphere 51.5
2828 Female, age 72, unknown 51.5
1830 Male, age 51, unknown 50.8
2219 Male, age 76, both hemispheres 49.9
2666 Male, age 74, left hemisphere 49.2
Dorsal raphe nucleus
nTPM: 53.3
2298 Female, age 72, unknown 55.2
2047 Male, age 72, unknown 53.6
2750 Male, age 76, both hemispheres 53.6
1828 Male, age 53, unknown 52.6
2016 Female, age 72, unknown 51.6
Inferior colliculus
nTPM: 52.8
2097 Female, age 72, unknown 53.8
1848 Female, age 42, unknown 53.0
2849 Male, age 72, unknown 52.3
1890 Male, age 53, unknown 52.2
Median raphe nucleus
nTPM: 52.1
2220 Male, age 76, midline 52.1
Pedunculopontine tegmental nucleus
nTPM: 52.1
2334 Male, age 80, both hemispheres 52.9
1921 Female, age 85, both hemispheres 51.9
2338 Male, age 61, both hemispheres 51.5
Periaquaductal grey, anterior
nTPM: 49.8
1795 Male, age 51, unknown 51.2
1947 Male, age 18, unknown 49.9
2502 Female, age 75, unknown 48.5
Periaquaductal grey, dorsal
nTPM: 52.0
2850 Male, age 76, both hemispheres 53.9
1840 Male, age 53, unknown 52.5
2464 Female, age 72, unknown 52.0
1831 Male, age 72, unknown 49.8
Periaquaductal grey, lateral
nTPM: 51.4
2272 Male, age 74, both hemispheres 52.8
2053 Male, age 18, unknown 51.1
2140 Male, age 76, both hemispheres 50.3
Pretectal area
nTPM: 51.6
2224 Female, age 72, unknown 53.8
2273 Male, age 74, both hemispheres 53.7
1817 Female, age 42, unknown 52.9
2667 Female, age 75, unknown 52.4
2007 Male, age 72, unknown 52.1
1815 Male, age 53, unknown 51.3
2825 Male, age 18, unknown 51.3
1944 Female, age 72, unknown 50.9
1816 Male, age 51, unknown 50.5
2316 Male, age 76, right hemisphere 50.0
2407 Male, age 75, both hemispheres 49.0
Red nucleus
nTPM: 54.6
2725 Female, age 75, unknown 59.2
1821 Female, age 72, unknown 57.5
2823 Male, age 76, right hemisphere 55.8
1865 Male, age 51, unknown 54.9
2769 Male, age 72, unknown 54.9
1904 Male, age 53, unknown 54.6
1954 Female, age 42, unknown 54.3
2227 Male, age 72, unknown 54.3
2503 Female, age 72, unknown 53.5
2785 Male, age 18, unknown 53.3
2588 Male, age 74, left hemisphere 51.8
2584 Male, age 75, left hemisphere 50.7
Substantia nigra
nTPM: 52.6
2409 Female, age 72, unknown 54.2
1916 Female, age 42, unknown 53.8
1851 Male, age 51, unknown 53.7
2699 Male, age 18, unknown 53.5
1889 Female, age 72, unknown 53.2
2590 Female, age 75, unknown 52.2
2241 Male, age 72, unknown 51.9
2665 Male, age 74, both hemispheres 51.7
1941 Male, age 53, unknown 51.2
2583 Male, age 75, right hemisphere 50.4
Superior colliculus
nTPM: 50.7
1913 Female, age 42, unknown 53.6
1796 Male, age 53, unknown 53.0
1995 Male, age 72, unknown 52.6
1895 Male, age 76, right hemisphere 51.3
1839 Male, age 51, unknown 50.9
2261 Male, age 18, unknown 50.9
2587 Male, age 74, left hemisphere 50.7
2087 Female, age 72, unknown 49.6
2668 Female, age 75, unknown 48.2
2664 Male, age 75, both hemispheres 46.0
Ventral tegmental area
nTPM: 52.9
2410 Female, age 72, unknown 56.1
1915 Female, age 42, unknown 54.0
2218 Male, age 76, both hemispheres 52.0
2021 Male, age 53, unknown 51.9
2223 Female, age 72, unknown 51.8
1942 Male, age 51, unknown 51.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.6
Samples: 139

Max nTPM: 107.8
Min nTPM: 29.3
Std nTPM: 11.7
Median nTPM: 51.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 107.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 106.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 100.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 77.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 74.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 74.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 73.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 72.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 71.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 71.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 70.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.4
FF:10158-103A5 76 years, female 49.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.5
Pig sample Sample description nTPM
Midbrain
nTPM: 32.5
Samples: 4

Max nTPM: 46.3
Min nTPM: 25.3
Sample A Female 46.3
Sample B Female 30.3
Sample C Male 28.0
Sample D Male 25.3
Periaqueductal gray
nTPM: 26.2
Samples: 3

Max nTPM: 27.9
Min nTPM: 24.1
Sample B Female 27.9
Sample C Male 26.6
Sample D Male 24.1
Substantia nigra
nTPM: 31.3
Samples: 4

Max nTPM: 37.2
Min nTPM: 29.2
Sample A Female 37.2
Sample B Female 29.2
Sample C Male 29.4
Sample D Male 29.2
Superior colliculi
nTPM: 30.3
Samples: 4

Max nTPM: 31.6
Min nTPM: 28.6
Sample A Female 31.4
Sample B Female 31.6
Sample C Male 29.4
Sample D Male 28.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 71.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.1
Samples: 4

Max nTPM: 77.4
Min nTPM: 64.8
Sample A Male 73.8
Sample B Male 68.2
Sample C Female 64.8
Sample D Female 77.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68191432 Antisense, RP_041129_01_B08, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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