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SLC6A1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:35.8 nTPM
HPA:35.8 nTPM
GTEx:68.9 nTPM
FANTOM5:142.6 Scaled Tags Per Million
Pig:130.8 nTPM
Mouse:206.9 nTPM
Allen mouse:6.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA013341Antibody CAB022293
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 35.8
Sample id Sample description nTPM
Hippocampus
nTPM: 28.9
2529 Female, age 94, left hemisphere 48.7
1911 Female, age 85, right hemisphere 33.4
2621 Female, age 67, right hemisphere 29.6
2148 Female, age 91, left hemisphere 22.7
1898 Male, age 80, left hemisphere 20.7
1855 Male, age 76, left hemisphere 18.3
Dentate gyrus
nTPM: 19.5
2246 Female, age 85, both hemispheres 29.5
2528 Male, age 74, both hemispheres 29.4
2530 Female, age 94, left hemisphere 22.3
1927 Female, age 91, both hemispheres 16.5
2531 Female, age 67, both hemispheres 11.0
2010 Male, age 76, both hemispheres 8.2
Entorhinal gyrus
nTPM: 32.7
1787 Male, age 76, left hemisphere 47.7
2117 Female, age 91, right hemisphere 39.1
2764 Male, age 80, right hemisphere 30.2
1938 Female, age 85, left hemisphere 27.7
2613 Female, age 94, left hemisphere 25.9
2686 Male, age 75, right hemisphere 25.3
Hippocampus, CA1
nTPM: 18.2
2527 Male, age 74, both hemispheres 38.5
1873 Female, age 85, both hemispheres 21.4
2749 Male, age 80, left hemisphere 15.0
2082 Female, age 91, right hemisphere 13.0
2045 Male, age 76, both hemispheres 3.1
Hippocampus, CA2
nTPM: 23.7
2437 Female, age 94, left hemisphere 36.7
1963 Male, age 80, left hemisphere 32.0
2249 Male, age 74, both hemispheres 24.0
2113 Female, age 91, right hemisphere 16.8
1892 Male, age 76, both hemispheres 16.3
1940 Female, age 85, left hemisphere 16.1
Hippocampus, CA3
nTPM: 16.2
1891 Female, age 85, both hemispheres 27.8
2861 Female, age 67, both hemispheres 18.9
1867 Male, age 76, both hemispheres 17.3
2436 Male, age 74, both hemispheres 13.9
2620 Female, age 94, left hemisphere 10.0
2137 Male, age 80, left hemisphere 9.3
Parahippocampal cortex
nTPM: 35.8
2250 Female, age 67, right hemisphere 43.7
2018 Male, age 76, both hemispheres 43.2
2622 Female, age 67, right hemisphere 40.9
2532 Female, age 72, left hemisphere 40.0
2692 Male, age 74, both hemispheres 37.9
1990 Female, age 91, right hemisphere 36.8
1933 Female, age 85, both hemispheres 31.7
2245 Female, age 91, both hemispheres 30.9
2693 Female, age 94, both hemispheres 29.8
1850 Male, age 80, both hemispheres 23.4
Perirhinal gyrus
nTPM: 35.8
1794 Male, age 80, right hemisphere 45.2
2521 Female, age 94, right hemisphere 41.0
2848 Male, age 76, right hemisphere 39.5
1841 Female, age 85, right hemisphere 27.3
1847 Female, age 91, left hemisphere 25.9
Subiculum
nTPM: 31.7
2619 Male, age 74, both hemispheres 49.4
2438 Female, age 94, left hemisphere 43.1
1977 Female, age 85, both hemispheres 30.6
2729 Female, age 91, right hemisphere 26.2
1901 Male, age 80, both hemispheres 23.8
2042 Male, age 76, both hemispheres 16.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 68.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 68.9
Samples: 197

Max nTPM: 165.0
Min nTPM: 6.8
Std nTPM: 26.2
Median nTPM: 66.7
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 165.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 148.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 144.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 131.9
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 130.0
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 124.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 123.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 120.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 120.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 118.6
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 115.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 142.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 142.6
FF:10153-102I9 76 years, female 143.9
FF:10169-103B7 60 years, female 141.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 130.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 82.7
Samples: 4

Max nTPM: 96.5
Min nTPM: 62.5
Sample A Female 96.5
Sample B Female 78.5
Sample C Male 93.2
Sample D Male 62.5
Entorhinal cortex
nTPM: 130.8
Samples: 4

Max nTPM: 143.0
Min nTPM: 120.1
Sample A Female 137.7
Sample B Female 122.4
Sample C Male 143.0
Sample D Male 120.1
Subiculum
nTPM: 121.2
Samples: 4

Max nTPM: 160.2
Min nTPM: 94.5
Sample A Female 160.2
Sample B Female 103.3
Sample C Male 126.7
Sample D Male 94.5
Ventral hippocampus
nTPM: 117.1
Samples: 4

Max nTPM: 172.7
Min nTPM: 82.8
Sample A Female 128.2
Sample B Female 82.8
Sample C Male 172.7
Sample D Male 84.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 206.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 206.9
Samples: 4

Max nTPM: 228.0
Min nTPM: 192.3
Sample A Male 207.2
Sample B Male 192.3
Sample C Female 200.1
Sample D Female 228.0
Hippocampal formation
nTPM: 178.6
Samples: 4

Max nTPM: 185.6
Min nTPM: 168.2
Sample A Male 176.4
Sample B Male 185.6
Sample C Female 168.2
Sample D Female 184.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.5
79591685 Antisense, RP_071204_04_H01, Mouse strain C57BL/6J (56 days, male) 8.6
79904152 Antisense, RP_071204_04_H01, Mouse strain C57BL/6J (56 days, male) 7.7
477 Antisense, RP_Baylor_253976, Mouse strain C57BL/6J (56 days, male) 4.3
476 Antisense, RP_Baylor_253976, Mouse strain C57BL/6J (56 days, male) 2.8

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.