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HIPPOCAMPAL FORMATION - Expression summary
Mouse brain, Intensity
Hippocampal formationi 		120.146
Protein expressioni No data
RNA expressioni
Consensus:92.9 nTPM
HPA:92.9 nTPM
GTEx:59.5 nTPM
FANTOM5:201.7 Scaled Tags Per Million
Pig:188.2 nTPM
Mouse:148.1 nTPM
Allen mouse:18.3 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody CAB079005
Hippocampal formation mean intensity 120.146
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 111.789
Molecular layer of the dentate gyrus 101.736
Granular dentate gyrus 71.446
CA1 - oriens layer 95.982
CA1 - pyramidal layer 57.399
CA1 - radiatum layer 101.258
CA2 - oriens layer 106.581
CA2 - pyramidal layer 72.633
CA2 - radiatum layer 109.234
CA3 - oriens layer 117.415
CA3 - pyramidal layer 70.305
CA3 - radiatum layer 114.155
Stratum lucidum 100.718
Lacunosum moleculare 75.247
Subiculum 99.660

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 92.9
Sample id Sample description nTPM
Hippocampus
nTPM: 28.0
1898 Male, age 80, left hemisphere 73.0
1855 Male, age 76, left hemisphere 40.8
2148 Female, age 91, left hemisphere 34.8
2621 Female, age 67, right hemisphere 19.7
1911 Female, age 85, right hemisphere 0.0
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 38.9
2530 Female, age 94, left hemisphere 45.7
1927 Female, age 91, both hemispheres 43.0
2246 Female, age 85, both hemispheres 41.6
2010 Male, age 76, both hemispheres 36.3
2528 Male, age 74, both hemispheres 34.3
2531 Female, age 67, both hemispheres 32.2
Entorhinal gyrus
nTPM: 49.4
2764 Male, age 80, right hemisphere 92.0
2613 Female, age 94, left hemisphere 73.3
1938 Female, age 85, left hemisphere 60.4
1787 Male, age 76, left hemisphere 36.5
2686 Male, age 75, right hemisphere 31.7
2117 Female, age 91, right hemisphere 2.2
Hippocampus, CA1
nTPM: 30.5
1873 Female, age 85, both hemispheres 47.3
2749 Male, age 80, left hemisphere 39.6
2082 Female, age 91, right hemisphere 33.0
2045 Male, age 76, both hemispheres 23.5
2527 Male, age 74, both hemispheres 9.2
Hippocampus, CA2
nTPM: 32.0
1963 Male, age 80, left hemisphere 68.6
1892 Male, age 76, both hemispheres 47.6
1940 Female, age 85, left hemisphere 37.8
2437 Female, age 94, left hemisphere 19.4
2113 Female, age 91, right hemisphere 18.6
2249 Male, age 74, both hemispheres 0.0
Hippocampus, CA3
nTPM: 18.4
2620 Female, age 94, left hemisphere 50.8
2861 Female, age 67, both hemispheres 41.2
1867 Male, age 76, both hemispheres 13.0
2137 Male, age 80, left hemisphere 3.1
1891 Female, age 85, both hemispheres 1.8
2436 Male, age 74, both hemispheres 0.6
Parahippocampal cortex
nTPM: 49.6
1850 Male, age 80, both hemispheres 92.3
2693 Female, age 94, both hemispheres 77.2
1933 Female, age 85, both hemispheres 66.3
2532 Female, age 72, left hemisphere 52.2
2245 Female, age 91, both hemispheres 51.9
1990 Female, age 91, right hemisphere 48.5
2622 Female, age 67, right hemisphere 40.4
2250 Female, age 67, right hemisphere 29.3
2018 Male, age 76, both hemispheres 21.5
2692 Male, age 74, both hemispheres 16.0
Perirhinal gyrus
nTPM: 92.9
1847 Female, age 91, left hemisphere 126.2
1794 Male, age 80, right hemisphere 108.3
2521 Female, age 94, right hemisphere 93.5
1841 Female, age 85, right hemisphere 74.0
2848 Male, age 76, right hemisphere 62.4
Subiculum
nTPM: 11.8
1977 Female, age 85, both hemispheres 46.4
2619 Male, age 74, both hemispheres 14.2
2729 Female, age 91, right hemisphere 10.5
1901 Male, age 80, both hemispheres 0.0
2042 Male, age 76, both hemispheres 0.0
2438 Female, age 94, left hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 59.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 59.5
Samples: 197

Max nTPM: 304.9
Min nTPM: 0.7
Std nTPM: 54.9
Median nTPM: 42.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 304.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 253.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 223.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 214.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 212.9
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 206.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 200.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 180.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 177.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 175.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 173.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 201.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 201.7
FF:10169-103B7 60 years, female 255.3
FF:10153-102I9 76 years, female 148.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 188.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 133.2
Samples: 4

Max nTPM: 182.0
Min nTPM: 61.2
Sample A Female 174.9
Sample B Female 182.0
Sample C Male 61.2
Sample D Male 114.5
Entorhinal cortex
nTPM: 122.5
Samples: 4

Max nTPM: 140.7
Min nTPM: 106.5
Sample A Female 130.5
Sample B Female 106.5
Sample C Male 140.7
Sample D Male 112.4
Subiculum
nTPM: 140.7
Samples: 4

Max nTPM: 175.2
Min nTPM: 119.9
Sample A Female 175.2
Sample B Female 127.2
Sample C Male 140.5
Sample D Male 119.9
Ventral hippocampus
nTPM: 188.3
Samples: 4

Max nTPM: 259.6
Min nTPM: 117.5
Sample A Female 257.9
Sample B Female 117.5
Sample C Male 259.6
Sample D Male 118.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 148.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 135.4
Samples: 4

Max nTPM: 180.1
Min nTPM: 107.6
Sample A Male 107.6
Sample B Male 120.3
Sample C Female 133.6
Sample D Female 180.1
Hippocampal formation
nTPM: 148.1
Samples: 4

Max nTPM: 159.2
Min nTPM: 141.3
Sample A Male 141.3
Sample B Male 159.2
Sample C Female 142.2
Sample D Female 149.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 18.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 18.3
71020896 Antisense, RP_050512_03_H05, Mouse strain C57BL/6J (56 days, male) 18.7
73929870 Antisense, RP_051214_03_H04, Mouse strain C57BL/6J (56 days, male) 18.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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