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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.0 nTPM
HPA:35.0 nTPM
GTEx:22.8 nTPM
FANTOM5:84.8 Scaled Tags Per Million
Pig:33.1 nTPM
Mouse:6.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.8
1830 Male, age 51, unknown 37.6
1833 Male, age 53, unknown 32.8
2019 Male, age 18, unknown 32.8
1870 Female, age 42, unknown 32.7
2411 Female, age 72, unknown 29.6
2666 Male, age 74, left hemisphere 24.8
2828 Female, age 72, unknown 24.3
1827 Male, age 72, unknown 20.5
2586 Male, age 75, left hemisphere 17.0
2219 Male, age 76, both hemispheres 15.6
Dorsal raphe nucleus
nTPM: 21.0
2750 Male, age 76, both hemispheres 27.7
2016 Female, age 72, unknown 25.4
1828 Male, age 53, unknown 20.5
2298 Female, age 72, unknown 16.7
2047 Male, age 72, unknown 14.5
Inferior colliculus
nTPM: 19.7
1890 Male, age 53, unknown 22.9
1848 Female, age 42, unknown 21.7
2849 Male, age 72, unknown 19.0
2097 Female, age 72, unknown 15.5
Median raphe nucleus
nTPM: 20.4
2220 Male, age 76, midline 20.4
Pedunculopontine tegmental nucleus
nTPM: 27.6
2338 Male, age 61, both hemispheres 35.1
2334 Male, age 80, both hemispheres 26.5
1921 Female, age 85, both hemispheres 21.2
Periaquaductal grey, anterior
nTPM: 19.2
1947 Male, age 18, unknown 21.7
2502 Female, age 75, unknown 19.8
1795 Male, age 51, unknown 16.1
Periaquaductal grey, dorsal
nTPM: 19.7
2464 Female, age 72, unknown 22.8
2850 Male, age 76, both hemispheres 21.8
1831 Male, age 72, unknown 20.4
1840 Male, age 53, unknown 13.8
Periaquaductal grey, lateral
nTPM: 23.7
2272 Male, age 74, both hemispheres 24.8
2140 Male, age 76, both hemispheres 24.1
2053 Male, age 18, unknown 22.2
Pretectal area
nTPM: 19.6
2316 Male, age 76, right hemisphere 26.2
2407 Male, age 75, both hemispheres 25.7
2273 Male, age 74, both hemispheres 22.3
1815 Male, age 53, unknown 22.2
2825 Male, age 18, unknown 20.8
2007 Male, age 72, unknown 19.5
1817 Female, age 42, unknown 18.9
2667 Female, age 75, unknown 18.3
2224 Female, age 72, unknown 16.0
1944 Female, age 72, unknown 14.5
1816 Male, age 51, unknown 11.7
Red nucleus
nTPM: 35.0
1865 Male, age 51, unknown 44.3
1904 Male, age 53, unknown 42.7
2227 Male, age 72, unknown 40.3
2769 Male, age 72, unknown 40.3
1821 Female, age 72, unknown 36.1
2785 Male, age 18, unknown 34.4
1954 Female, age 42, unknown 33.7
2823 Male, age 76, right hemisphere 32.4
2503 Female, age 72, unknown 32.1
2588 Male, age 74, left hemisphere 30.5
2725 Female, age 75, unknown 27.2
2584 Male, age 75, left hemisphere 25.9
Substantia nigra
nTPM: 22.1
2409 Female, age 72, unknown 30.1
2583 Male, age 75, right hemisphere 25.6
1851 Male, age 51, unknown 24.6
2590 Female, age 75, unknown 24.6
2699 Male, age 18, unknown 22.6
1889 Female, age 72, unknown 20.7
1941 Male, age 53, unknown 20.7
2241 Male, age 72, unknown 19.1
2665 Male, age 74, both hemispheres 17.8
1916 Female, age 42, unknown 15.5
Superior colliculus
nTPM: 23.8
1913 Female, age 42, unknown 39.9
1995 Male, age 72, unknown 32.2
2587 Male, age 74, left hemisphere 26.5
2668 Female, age 75, unknown 25.1
1895 Male, age 76, right hemisphere 24.4
1839 Male, age 51, unknown 24.3
1796 Male, age 53, unknown 18.2
2087 Female, age 72, unknown 17.3
2664 Male, age 75, both hemispheres 15.1
2261 Male, age 18, unknown 14.8
Ventral tegmental area
nTPM: 23.4
2223 Female, age 72, unknown 33.8
2410 Female, age 72, unknown 25.2
1915 Female, age 42, unknown 20.7
1942 Male, age 51, unknown 20.6
2218 Male, age 76, both hemispheres 20.5
2021 Male, age 53, unknown 19.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.8
Samples: 139

Max nTPM: 92.5
Min nTPM: 6.6
Std nTPM: 13.4
Median nTPM: 20.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 92.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 82.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 71.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 57.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 53.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 48.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 48.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 45.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 42.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 41.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 40.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.8
FF:10158-103A5 76 years, female 84.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.1
Pig sample Sample description nTPM
Midbrain
nTPM: 33.1
Samples: 4

Max nTPM: 75.5
Min nTPM: 15.9
Sample A Female 75.5
Sample B Female 23.9
Sample C Male 17.0
Sample D Male 15.9
Periaqueductal gray
nTPM: 17.6
Samples: 3

Max nTPM: 20.0
Min nTPM: 15.5
Sample B Female 20.0
Sample C Male 15.5
Sample D Male 17.4
Substantia nigra
nTPM: 27.6
Samples: 4

Max nTPM: 42.8
Min nTPM: 20.3
Sample A Female 25.8
Sample B Female 20.3
Sample C Male 21.6
Sample D Male 42.8
Superior colliculi
nTPM: 24.1
Samples: 4

Max nTPM: 28.7
Min nTPM: 15.7
Sample A Female 26.5
Sample B Female 15.7
Sample C Male 25.4
Sample D Male 28.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.0
Samples: 4

Max nTPM: 6.4
Min nTPM: 5.7
Sample A Male 5.7
Sample B Male 6.4
Sample C Female 6.1
Sample D Female 5.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69013167 Antisense, RP_050309_02_B03, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.