Single cell type - ZNF618 - The Human Protein Atlas

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	ZNF618
Gene descriptionⁱ Full gene name according to HGNC.	Zinc finger protein 618
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Transcription factors
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	5

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type expression clusterⁱ The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity. Read more	Non-specific - Transcription (mainly)
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Horizontal cells)
Immune cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low immune cell specificity
Immune cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in some
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines. Read more	Cell line enhanced (AF22, REH)
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines. Read more	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (nTPM) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Horizontal cells)

SINGLE CELL TISSUES OVERVIEWⁱ An overview of all tissues where single cell type expression has been analyzed. Each tissue name and corresponding UMAP plot is clickable and redirects to the selected tissue.
Adipose tissue Bone marrow Brain Breast Bronchus Colon Endometrium Esophagus Eye Heart muscle Kidney Liver Lung Lymph node Ovary Pancreas Placenta Prostate Rectum Skeletal muscle Skin Small intestine Spleen Stomach Testis

EXPRESSION CLUSTERING & CORRELATIONⁱ

ZNF618 is part of cluster 52 Non-specific - Transcription with confidenceⁱ 1
611 genes in cluster

Go to interactive expression cluster page

15 nearest neighbours based on single cell type RNA expression

Neighbourⁱ Gene name according to HGNC.	Descriptionⁱ Gene description according to HGNC.	Correlationⁱ Correlation between the selected gene and neighboring gene. Correlation is calculated as Spearman correlation in PCA space based on the RNA-seq expression data. Read more	Clusterⁱ ID of the expression cluster of the neighboring gene. Read more
GPR161	G protein-coupled receptor 161	0.6626	62
ZFP92	ZFP92 zinc finger protein	0.5605	48
PDE3A	Phosphodiesterase 3A	0.5275	8
SALL2	Spalt like transcription factor 2	0.5273	62
ZNF469	Zinc finger protein 469	0.5264	43
NAP1L3	Nucleosome assembly protein 1 like 3	0.5152	8
KIF7	Kinesin family member 7	0.5145	43
CHRNA2	Cholinergic receptor nicotinic alpha 2 subunit	0.5011	8
TRO	Trophinin	0.4952	36
ZNF630	Zinc finger protein 630	0.4945	52
NACAD	NAC alpha domain containing	0.4934	62
MAP3K15	Mitogen-activated protein kinase kinase kinase 15	0.4880	52
FIGN	Fidgetin, microtubule severing factor	0.4849	8
ADCY5	Adenylate cyclase 5	0.4825	54
EMID1	EMI domain containing 1	0.4793	52

SINGLE CELL TISSUESⁱ Single cell RNA levels of annotated cell type clusters are shown separately for each analyzed tissue. For easier navigation across tissues, use the above Single cell tissue overview, where each tissue name and UMAP plot is clickable and redirects to the selected tissue, alternatively the grey browser on the left side of the window. Barchart shows nTPM levels in each annotated cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Adipose tissue
Cluster Expression Alphabetical Bone marrow
Cluster Expression Alphabetical Brain
Cluster Expression Alphabetical Breast
Cluster Expression Alphabetical Bronchus
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Endometrium
Cluster Expression Alphabetical Esophagus
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Lymph node
Cluster Expression Alphabetical Ovary
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skeletal muscle
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Spleen
Cluster Expression Alphabetical Stomach
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ

Organ

Expression

Alphabetical

Adipocytes	9.1 nTPM
Breast	10.9 nTPM
Adipose tissue	7.4 nTPM

Alveolar cells type 1	3.2 nTPM
Lung	3.2 nTPM

Alveolar cells type 2	13.2 nTPM
Lung	13.2 nTPM

Astrocytes	4.9 nTPM
Brain	4.9 nTPM

B-cells	2.1 nTPM
Kidney	4.8 nTPM
Stomach	3.7 nTPM
Lymph node	3.1 nTPM
Breast	2.6 nTPM
Spleen	2.1 nTPM
Bone marrow	1.7 nTPM
Colon	1.6 nTPM
Adipose tissue	1.0 nTPM
Liver	0.9 nTPM
PBMC	0.0 nTPM

Dendritic cells	3.1 nTPM
PBMC	4.0 nTPM
Adipose tissue	3.7 nTPM
Breast	1.5 nTPM

Endothelial cells	10.0 nTPM
Endometrium	30.8 nTPM
Eye	29.9 nTPM
Ovary	22.7 nTPM
Pancreas	11.6 nTPM
Breast	11.5 nTPM
Skeletal muscle	6.4 nTPM
Lung	6.2 nTPM
Skin	5.0 nTPM
Placenta	4.6 nTPM
Prostate	3.5 nTPM
Liver	2.7 nTPM
Heart muscle	2.5 nTPM
Esophagus	1.5 nTPM
Testis	0.9 nTPM

Fibroblasts	12.7 nTPM
Ovary	34.3 nTPM
Skeletal muscle	18.3 nTPM
Esophagus	16.8 nTPM
Adipose tissue	15.8 nTPM
Breast	14.9 nTPM
Placenta	13.6 nTPM
Stomach	7.4 nTPM
Lung	6.7 nTPM
Skin	5.6 nTPM
Prostate	3.4 nTPM
Heart muscle	2.9 nTPM

Intestinal goblet cells	2.1 nTPM
Rectum	3.9 nTPM
Colon	1.4 nTPM
Small intestine	1.1 nTPM

Macrophages	7.2 nTPM
Breast	25.1 nTPM
Prostate	13.8 nTPM
Esophagus	12.6 nTPM
Ovary	10.2 nTPM
Endometrium	9.9 nTPM
Testis	8.8 nTPM
Skeletal muscle	7.8 nTPM
Adipose tissue	5.7 nTPM
Pancreas	5.1 nTPM
Lung	3.3 nTPM
Spleen	3.1 nTPM
Kidney	3.0 nTPM
PBMC	0.0 nTPM
Bone marrow	0.0 nTPM
Stomach	0.0 nTPM

Paneth cells	1.9 nTPM
Small intestine	3.7 nTPM
Rectum	2.1 nTPM
Colon	0.0 nTPM

Plasma cells	0.4 nTPM
Adipose tissue	1.3 nTPM
Stomach	0.4 nTPM
Spleen	0.3 nTPM
Esophagus	0.0 nTPM
Bone marrow	0.0 nTPM

Respiratory ciliated cells	2.3 nTPM
Lung	2.9 nTPM
Bronchus	1.7 nTPM

Smooth muscle cells	19.2 nTPM
Endometrium	41.3 nTPM
Adipose tissue	31.7 nTPM
Ovary	27.1 nTPM
Esophagus	24.8 nTPM
Breast	21.4 nTPM
Skeletal muscle	20.9 nTPM
Skin	14.7 nTPM
Heart muscle	12.4 nTPM
Pancreas	10.8 nTPM
Prostate	6.0 nTPM
Bronchus	0.0 nTPM

T-cells	2.0 nTPM
Esophagus	6.6 nTPM
Lung	6.1 nTPM
Endometrium	5.8 nTPM
Liver	3.6 nTPM
Skeletal muscle	2.8 nTPM
Kidney	2.7 nTPM
Adipose tissue	2.0 nTPM
Breast	1.8 nTPM
PBMC	0.6 nTPM
Skin	0.5 nTPM
Bone marrow	0.4 nTPM
Stomach	0.4 nTPM
Lymph node	0.3 nTPM
Spleen	0.2 nTPM
Colon	0.0 nTPM
Prostate	0.0 nTPM
Ovary	0.0 nTPM

Basal squamous epithelial cells	12.0 nTPM
Esophagus	12.0 nTPM

Cholangiocytes	24.3 nTPM
Liver	24.3 nTPM

Collecting duct cells	11.0 nTPM
Kidney	11.0 nTPM

Cone photoreceptor cells	4.2 nTPM
Eye	4.2 nTPM

Undifferentiated cells	2.8 nTPM
Small intestine	3.6 nTPM
Rectum	2.4 nTPM
Colon	2.3 nTPM

Adipose tissue

Bone marrow

Brain

Breast

Bronchus

Colon

Endometrium

Esophagus

Eye

Heart muscle

Kidney

Liver

Lung

Lymph node

Ovary

Pancreas

Placenta

Prostate

Rectum

Skeletal muscle

Skin

Small intestine

Spleen

Stomach

Testis

PBMC