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SNX22
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.5 nTPM
HPA:12.5 nTPM
GTEx:13.9 nTPM
FANTOM5:20.4 Scaled Tags Per Million
Pig:38.6 nTPM
Mouse:5.1 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 8.3
2288 Male, age 75, left hemisphere 10.7
2289 Male, age 61, right hemisphere 8.7
1857 Female, age 85, left hemisphere 8.3
2290 Female, age 72, unknown 8.3
1854 Male, age 80, left hemisphere 8.0
2481 Female, age 94, left hemisphere 7.8
2846 Female, age 79, unknown 7.5
1781 Male, age 74, unknown 6.8
Claustrum
nTPM: 10.2
2292 Female, age 85, both hemispheres 11.4
2491 Male, age 75, both hemispheres 11.1
2392 Female, age 94, both hemispheres 11.0
1956 Male, age 74, unknown 10.9
2568 Male, age 61, both hemispheres 10.2
2196 Female, age 79, unknown 10.0
2284 Female, age 91, both hemispheres 9.3
2198 Male, age 80, both hemispheres 8.8
2645 Female, age 72, unknown 8.7
Globus pallidus, externus
nTPM: 11.7
2567 Female, age 72, unknown 13.0
2646 Male, age 61, right hemisphere 12.6
1996 Male, age 80, right hemisphere 12.1
2772 Female, age 79, unknown 11.8
2395 Male, age 75, both hemispheres 9.1
Globus pallidus, internus
nTPM: 12.5
2111 Female, age 85, right hemisphere 15.9
2566 Female, age 72, unknown 12.5
2037 Male, age 80, right hemisphere 12.1
1818 Male, age 74, unknown 11.9
2287 Male, age 75, right hemisphere 11.7
2778 Female, age 91, both hemispheres 11.7
2483 Female, age 94, right hemisphere 11.3
Nucleus accumbens
nTPM: 8.8
2732 Male, age 80, right hemisphere 10.3
2698 Female, age 72, unknown 9.7
1806 Female, age 85, left hemisphere 9.0
2286 Male, age 75, left hemisphere 9.0
2824 Male, age 61, right hemisphere 8.6
1783 Male, age 74, unknown 8.1
1856 Female, age 91, right hemisphere 7.8
2391 Female, age 94, left hemisphere 7.5
Nucleus basalis of Meynert
nTPM: 10.2
2569 Male, age 61, both hemispheres 11.9
2484 Female, age 94, left hemisphere 10.8
2821 Male, age 75, both hemispheres 9.7
2393 Male, age 80, right hemisphere 8.4
Nucleus of the diagonal band
nTPM: 8.3
2029 Male, age 61, right hemisphere 9.0
1979 Male, age 74, unknown 8.7
2195 Female, age 85, both hemispheres 8.2
2775 Male, age 80, right hemisphere 8.1
1812 Female, age 91, both hemispheres 7.6
Olfactory tubercle
nTPM: 8.7
2856 Male, age 75, right hemisphere 9.4
2487 Female, age 94, left hemisphere 8.6
1846 Male, age 80, right hemisphere 8.5
1998 Female, age 91, both hemispheres 8.3
Putamen
nTPM: 8.8
2489 Female, age 72, unknown 10.4
2482 Female, age 94, left hemisphere 10.1
2647 Male, age 75, left hemisphere 9.3
1829 Male, age 74, unknown 9.0
2466 Female, age 79, unknown 8.5
1937 Female, age 91, right hemisphere 8.4
1838 Male, age 80, right hemisphere 6.1
Septal nuclei
nTPM: 8.9
2394 Male, age 61, left hemisphere 11.2
2199 Male, age 80, right hemisphere 10.6
2059 Female, age 85, both hemispheres 9.9
1960 Male, age 74, unknown 8.3
2009 Female, age 91, both hemispheres 8.1
2629 Female, age 94, right hemisphere 7.5
2031 Female, age 72, unknown 6.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.6
Samples: 246

Max nTPM: 28.2
Min nTPM: 0.8
Std nTPM: 4.7
Median nTPM: 8.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 28.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 26.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 25.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 24.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 24.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 21.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 20.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 20.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 20.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 19.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 19.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.7
Samples: 246

Max nTPM: 41.1
Min nTPM: 0.0
Std nTPM: 6.1
Median nTPM: 8.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 41.1
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 35.8
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 33.1
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 31.3
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 31.1
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 29.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 29.0
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 24.1
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 23.2
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 23.0
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 22.3
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Brain - Putamen (basal ganglia)
Average nTPM: 13.9
Samples: 205

Max nTPM: 48.4
Min nTPM: 3.6
Std nTPM: 6.3
Median nTPM: 13.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 48.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 42.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 38.3
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 38.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 27.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 26.1
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 25.3
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 25.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 24.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 24.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 23.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 8.5
FF:10164-103B2 76 years, female 8.5
Globus pallidus
Scaled Tags Per Million: 20.4
FF:10175-103C4 60 years, female 27.6
FF:10161-103A8 76 years, female 13.3
Nucleus accumbens
Scaled Tags Per Million: 17.7
FF:10037-101F1 23-56 years, mixed 17.7
Putamen
Scaled Tags Per Million: 10.9
FF:10176-103C5 60 years, female 10.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 38.6
Pig sample Sample description nTPM
Caudate
nTPM: 24.3
Samples: 4

Max nTPM: 26.3
Min nTPM: 21.0
Sample A Female 23.9
Sample B Female 26.3
Sample C Male 25.9
Sample D Male 21.0
Putamen
nTPM: 38.6
Samples: 4

Max nTPM: 60.2
Min nTPM: 25.2
Sample A Female 60.2
Sample B Female 25.2
Sample C Male 32.7
Sample D Male 36.3
Septum
nTPM: 34.6
Samples: 4

Max nTPM: 37.5
Min nTPM: 28.7
Sample A Female 36.7
Sample B Female 28.7
Sample C Male 37.5
Sample D Male 35.6
Ventral pallidum
nTPM: 33.5
Samples: 4

Max nTPM: 40.0
Min nTPM: 24.8
Sample A Female 24.8
Sample B Female 32.0
Sample C Male 40.0
Sample D Male 37.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.9
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.4
Sample A Male 4.1
Sample B Male 3.9
Sample C Female 4.3
Sample D Female 3.4
Septum
nTPM: 5.1
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.1
Sample A Male 4.1
Sample B Male 5.1
Sample C Female 5.5
Sample D Female 5.6
Ventral forebrain
nTPM: 3.5
Samples: 4

Max nTPM: 4.1
Min nTPM: 3.0
Sample A Male 3.0
Sample B Male 3.5
Sample C Female 3.3
Sample D Female 4.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
70299989 Antisense, RP_050602_03_H01, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
70299989 Antisense, RP_050602_03_H01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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