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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.7 nTPM
HPA:17.7 nTPM
GTEx:20.3 nTPM
FANTOM5:18.1 Scaled Tags Per Million
Pig:13.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.6
1870 Female, age 42, unknown 18.8
1830 Male, age 51, unknown 17.8
1833 Male, age 53, unknown 17.4
2219 Male, age 76, both hemispheres 16.8
2411 Female, age 72, unknown 16.6
2828 Female, age 72, unknown 16.4
1827 Male, age 72, unknown 16.2
2019 Male, age 18, unknown 16.2
2666 Male, age 74, left hemisphere 15.4
2586 Male, age 75, left hemisphere 14.6
Dorsal raphe nucleus
nTPM: 16.7
2750 Male, age 76, both hemispheres 17.2
2298 Female, age 72, unknown 16.8
2016 Female, age 72, unknown 16.7
1828 Male, age 53, unknown 16.5
2047 Male, age 72, unknown 16.2
Inferior colliculus
nTPM: 16.9
2849 Male, age 72, unknown 17.7
1848 Female, age 42, unknown 17.0
2097 Female, age 72, unknown 16.6
1890 Male, age 53, unknown 16.5
Median raphe nucleus
nTPM: 16.8
2220 Male, age 76, midline 16.8
Pedunculopontine tegmental nucleus
nTPM: 17.7
2338 Male, age 61, both hemispheres 18.1
2334 Male, age 80, both hemispheres 17.8
1921 Female, age 85, both hemispheres 17.3
Periaquaductal grey, anterior
nTPM: 16.6
2502 Female, age 75, unknown 17.1
1947 Male, age 18, unknown 16.6
1795 Male, age 51, unknown 15.9
Periaquaductal grey, dorsal
nTPM: 16.8
2850 Male, age 76, both hemispheres 18.2
1831 Male, age 72, unknown 16.4
1840 Male, age 53, unknown 16.4
2464 Female, age 72, unknown 16.4
Periaquaductal grey, lateral
nTPM: 17.3
2272 Male, age 74, both hemispheres 17.6
2053 Male, age 18, unknown 17.3
2140 Male, age 76, both hemispheres 16.9
Pretectal area
nTPM: 16.7
2273 Male, age 74, both hemispheres 17.8
2224 Female, age 72, unknown 17.7
2825 Male, age 18, unknown 17.5
2407 Male, age 75, both hemispheres 17.0
1815 Male, age 53, unknown 16.7
2667 Female, age 75, unknown 16.6
1944 Female, age 72, unknown 16.4
1817 Female, age 42, unknown 16.1
1816 Male, age 51, unknown 16.0
2316 Male, age 76, right hemisphere 15.9
2007 Male, age 72, unknown 15.7
Red nucleus
nTPM: 17.4
1865 Male, age 51, unknown 18.8
2725 Female, age 75, unknown 18.2
2823 Male, age 76, right hemisphere 18.2
1821 Female, age 72, unknown 17.9
1954 Female, age 42, unknown 17.9
1904 Male, age 53, unknown 17.8
2227 Male, age 72, unknown 17.6
2769 Male, age 72, unknown 17.6
2503 Female, age 72, unknown 17.4
2785 Male, age 18, unknown 16.6
2588 Male, age 74, left hemisphere 15.9
2584 Male, age 75, left hemisphere 15.3
Substantia nigra
nTPM: 16.8
2409 Female, age 72, unknown 19.1
2699 Male, age 18, unknown 17.8
2241 Male, age 72, unknown 17.2
1889 Female, age 72, unknown 16.8
1916 Female, age 42, unknown 16.7
1941 Male, age 53, unknown 16.3
2590 Female, age 75, unknown 16.2
1851 Male, age 51, unknown 16.0
2583 Male, age 75, right hemisphere 15.9
2665 Male, age 74, both hemispheres 15.9
Superior colliculus
nTPM: 16.7
1895 Male, age 76, right hemisphere 18.2
1913 Female, age 42, unknown 18.1
2587 Male, age 74, left hemisphere 18.1
1995 Male, age 72, unknown 17.1
1839 Male, age 51, unknown 16.8
2087 Female, age 72, unknown 16.0
2668 Female, age 75, unknown 15.9
1796 Male, age 53, unknown 15.7
2261 Male, age 18, unknown 15.7
2664 Male, age 75, both hemispheres 14.8
Ventral tegmental area
nTPM: 16.9
2021 Male, age 53, unknown 17.9
2223 Female, age 72, unknown 17.6
2218 Male, age 76, both hemispheres 17.2
1915 Female, age 42, unknown 16.5
1942 Male, age 51, unknown 16.2
2410 Female, age 72, unknown 15.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.3
Samples: 139

Max nTPM: 52.3
Min nTPM: 9.8
Std nTPM: 6.0
Median nTPM: 19.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 52.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 43.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 35.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 33.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 32.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 31.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 31.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 29.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 28.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 28.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 28.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.1
FF:10158-103A5 76 years, female 18.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.1
Pig sample Sample description nTPM
Midbrain
nTPM: 13.1
Samples: 4

Max nTPM: 16.6
Min nTPM: 10.8
Sample A Female 16.6
Sample B Female 13.9
Sample C Male 11.1
Sample D Male 10.8
Periaqueductal gray
nTPM: 12.8
Samples: 3

Max nTPM: 13.7
Min nTPM: 11.5
Sample B Female 11.5
Sample C Male 13.1
Sample D Male 13.7
Substantia nigra
nTPM: 12.4
Samples: 4

Max nTPM: 15.0
Min nTPM: 9.3
Sample A Female 11.7
Sample B Female 9.3
Sample C Male 13.7
Sample D Male 15.0
Superior colliculi
nTPM: 10.5
Samples: 4

Max nTPM: 12.4
Min nTPM: 8.4
Sample A Female 9.0
Sample B Female 8.4
Sample C Male 12.4
Sample D Male 12.1

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The Human Protein Atlas project is funded
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