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RNF166
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.2 nTPM
HPA:16.2 nTPM
GTEx:18.1 nTPM
FANTOM5:19.8 Scaled Tags Per Million
Pig:8.4 nTPM
Mouse:28.5 nTPM
Allen mouse:0.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 14.8
1781 Male, age 74, unknown 15.5
2846 Female, age 79, unknown 15.5
2481 Female, age 94, left hemisphere 15.3
2289 Male, age 61, right hemisphere 15.2
1857 Female, age 85, left hemisphere 15.0
2290 Female, age 72, unknown 14.5
1854 Male, age 80, left hemisphere 14.4
2288 Male, age 75, left hemisphere 13.2
Claustrum
nTPM: 15.3
2292 Female, age 85, both hemispheres 19.3
2645 Female, age 72, unknown 17.0
2568 Male, age 61, both hemispheres 16.6
2284 Female, age 91, both hemispheres 15.0
2196 Female, age 79, unknown 14.8
2198 Male, age 80, both hemispheres 14.5
2491 Male, age 75, both hemispheres 13.8
2392 Female, age 94, both hemispheres 13.6
1956 Male, age 74, unknown 13.4
Globus pallidus, externus
nTPM: 15.7
2567 Female, age 72, unknown 18.6
2646 Male, age 61, right hemisphere 16.2
2395 Male, age 75, both hemispheres 15.9
2772 Female, age 79, unknown 14.5
1996 Male, age 80, right hemisphere 13.1
Globus pallidus, internus
nTPM: 15.2
2111 Female, age 85, right hemisphere 17.5
2566 Female, age 72, unknown 17.4
2778 Female, age 91, both hemispheres 15.5
1818 Male, age 74, unknown 15.3
2037 Male, age 80, right hemisphere 15.2
2483 Female, age 94, right hemisphere 13.9
2287 Male, age 75, right hemisphere 11.5
Nucleus accumbens
nTPM: 13.8
2732 Male, age 80, right hemisphere 15.7
1783 Male, age 74, unknown 14.5
2824 Male, age 61, right hemisphere 14.4
1806 Female, age 85, left hemisphere 14.2
2391 Female, age 94, left hemisphere 13.2
2698 Female, age 72, unknown 13.2
1856 Female, age 91, right hemisphere 12.7
2286 Male, age 75, left hemisphere 12.6
Nucleus basalis of Meynert
nTPM: 16.2
2569 Male, age 61, both hemispheres 17.1
2821 Male, age 75, both hemispheres 16.6
2484 Female, age 94, left hemisphere 16.2
2393 Male, age 80, right hemisphere 14.9
Nucleus of the diagonal band
nTPM: 13.8
2029 Male, age 61, right hemisphere 14.6
2195 Female, age 85, both hemispheres 14.6
1979 Male, age 74, unknown 14.0
2775 Male, age 80, right hemisphere 13.3
1812 Female, age 91, both hemispheres 12.8
Olfactory tubercle
nTPM: 13.6
2487 Female, age 94, left hemisphere 14.3
1846 Male, age 80, right hemisphere 13.7
2856 Male, age 75, right hemisphere 13.2
1998 Female, age 91, both hemispheres 13.1
Putamen
nTPM: 15.6
2489 Female, age 72, unknown 17.5
2466 Female, age 79, unknown 16.4
2647 Male, age 75, left hemisphere 16.2
1829 Male, age 74, unknown 15.7
2482 Female, age 94, left hemisphere 14.7
1937 Female, age 91, right hemisphere 14.5
1838 Male, age 80, right hemisphere 14.0
Septal nuclei
nTPM: 13.9
2059 Female, age 85, both hemispheres 15.7
2394 Male, age 61, left hemisphere 14.9
2199 Male, age 80, right hemisphere 14.8
1960 Male, age 74, unknown 14.0
2009 Female, age 91, both hemispheres 13.6
2031 Female, age 72, unknown 12.9
2629 Female, age 94, right hemisphere 11.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 18.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 17.6
Samples: 246

Max nTPM: 30.9
Min nTPM: 7.3
Std nTPM: 3.5
Median nTPM: 17.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 30.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 28.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 27.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 26.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 26.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 25.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 25.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 25.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 24.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 24.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 23.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 17.0
Samples: 246

Max nTPM: 33.6
Min nTPM: 9.5
Std nTPM: 4.0
Median nTPM: 16.9
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 33.6
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 28.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 27.2
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 26.2
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 25.8
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 25.7
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 25.4
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 24.8
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 24.6
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 24.5
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 24.5
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Brain - Putamen (basal ganglia)
Average nTPM: 18.1
Samples: 205

Max nTPM: 29.3
Min nTPM: 9.6
Std nTPM: 3.5
Median nTPM: 17.6
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 29.3
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 27.9
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 27.9
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 27.8
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 25.7
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 25.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 25.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 24.4
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 24.2
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 24.0
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 23.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 14.0
FF:10164-103B2 76 years, female 14.0
Globus pallidus
Scaled Tags Per Million: 17.6
FF:10161-103A8 76 years, female 19.5
FF:10175-103C4 60 years, female 15.7
Nucleus accumbens
Scaled Tags Per Million: 19.2
FF:10037-101F1 23-56 years, mixed 19.2
Putamen
Scaled Tags Per Million: 19.8
FF:10176-103C5 60 years, female 19.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.4
Pig sample Sample description nTPM
Caudate
nTPM: 8.4
Samples: 4

Max nTPM: 10.1
Min nTPM: 5.5
Sample A Female 5.5
Sample B Female 10.1
Sample C Male 9.9
Sample D Male 8.0
Putamen
nTPM: 7.8
Samples: 4

Max nTPM: 9.5
Min nTPM: 6.1
Sample A Female 6.1
Sample B Female 7.4
Sample C Male 9.5
Sample D Male 8.3
Septum
nTPM: 6.5
Samples: 4

Max nTPM: 7.3
Min nTPM: 4.6
Sample A Female 6.8
Sample B Female 7.3
Sample C Male 7.1
Sample D Male 4.6
Ventral pallidum
nTPM: 7.3
Samples: 4

Max nTPM: 9.0
Min nTPM: 6.0
Sample A Female 6.0
Sample B Female 9.0
Sample C Male 7.6
Sample D Male 6.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 28.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 28.5
Samples: 4

Max nTPM: 34.1
Min nTPM: 25.3
Sample A Male 27.3
Sample B Male 34.1
Sample C Female 25.3
Sample D Female 27.2
Septum
nTPM: 15.7
Samples: 4

Max nTPM: 16.4
Min nTPM: 14.8
Sample A Male 15.5
Sample B Male 16.4
Sample C Female 14.8
Sample D Female 16.2
Ventral forebrain
nTPM: 20.7
Samples: 4

Max nTPM: 22.5
Min nTPM: 19.2
Sample A Male 22.5
Sample B Male 19.2
Sample C Female 21.0
Sample D Female 20.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
71020892 Antisense, RP_050510_04_F10, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.2
71020892 Antisense, RP_050510_04_F10, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.