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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.6 nTPM
HPA:22.6 nTPM
GTEx:20.6 nTPM
FANTOM5:29.0 Scaled Tags Per Million
Pig:17.2 nTPM
Mouse:33.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.9
2411 Female, age 72, unknown 23.6
2666 Male, age 74, left hemisphere 22.8
2828 Female, age 72, unknown 22.8
1827 Male, age 72, unknown 22.1
1870 Female, age 42, unknown 22.1
2019 Male, age 18, unknown 22.0
1830 Male, age 51, unknown 21.3
1833 Male, age 53, unknown 21.2
2219 Male, age 76, both hemispheres 20.5
2586 Male, age 75, left hemisphere 20.5
Dorsal raphe nucleus
nTPM: 22.0
2750 Male, age 76, both hemispheres 22.6
2298 Female, age 72, unknown 22.5
2047 Male, age 72, unknown 22.0
1828 Male, age 53, unknown 21.7
2016 Female, age 72, unknown 21.2
Inferior colliculus
nTPM: 21.1
1848 Female, age 42, unknown 21.3
1890 Male, age 53, unknown 21.2
2097 Female, age 72, unknown 21.2
2849 Male, age 72, unknown 20.9
Median raphe nucleus
nTPM: 21.3
2220 Male, age 76, midline 21.3
Pedunculopontine tegmental nucleus
nTPM: 21.9
2338 Male, age 61, both hemispheres 22.7
2334 Male, age 80, both hemispheres 21.9
1921 Female, age 85, both hemispheres 21.3
Periaquaductal grey, anterior
nTPM: 21.4
1947 Male, age 18, unknown 21.9
1795 Male, age 51, unknown 21.7
2502 Female, age 75, unknown 20.6
Periaquaductal grey, dorsal
nTPM: 21.5
2850 Male, age 76, both hemispheres 22.2
1831 Male, age 72, unknown 21.6
1840 Male, age 53, unknown 21.4
2464 Female, age 72, unknown 20.7
Periaquaductal grey, lateral
nTPM: 21.3
2140 Male, age 76, both hemispheres 21.4
2053 Male, age 18, unknown 21.2
2272 Male, age 74, both hemispheres 21.1
Pretectal area
nTPM: 22.0
2667 Female, age 75, unknown 22.6
2273 Male, age 74, both hemispheres 22.4
1944 Female, age 72, unknown 22.3
2224 Female, age 72, unknown 22.2
1816 Male, age 51, unknown 22.1
2825 Male, age 18, unknown 22.0
2007 Male, age 72, unknown 21.9
1815 Male, age 53, unknown 21.7
2316 Male, age 76, right hemisphere 21.7
1817 Female, age 42, unknown 21.6
2407 Male, age 75, both hemispheres 21.3
Red nucleus
nTPM: 21.9
1954 Female, age 42, unknown 22.9
2725 Female, age 75, unknown 22.6
2588 Male, age 74, left hemisphere 22.3
1821 Female, age 72, unknown 22.1
2769 Male, age 72, unknown 22.1
2785 Male, age 18, unknown 22.1
2823 Male, age 76, right hemisphere 21.9
2227 Male, age 72, unknown 21.8
1865 Male, age 51, unknown 21.7
1904 Male, age 53, unknown 21.6
2503 Female, age 72, unknown 21.2
2584 Male, age 75, left hemisphere 20.8
Substantia nigra
nTPM: 22.6
2409 Female, age 72, unknown 24.8
1916 Female, age 42, unknown 23.8
1851 Male, age 51, unknown 23.7
1941 Male, age 53, unknown 23.1
2583 Male, age 75, right hemisphere 22.8
2241 Male, age 72, unknown 22.2
1889 Female, age 72, unknown 21.8
2699 Male, age 18, unknown 21.8
2590 Female, age 75, unknown 21.3
2665 Male, age 74, both hemispheres 20.5
Superior colliculus
nTPM: 21.1
1796 Male, age 53, unknown 22.3
2668 Female, age 75, unknown 21.9
1839 Male, age 51, unknown 21.2
1995 Male, age 72, unknown 21.2
1913 Female, age 42, unknown 21.1
2087 Female, age 72, unknown 20.9
2261 Male, age 18, unknown 20.8
2587 Male, age 74, left hemisphere 20.8
1895 Male, age 76, right hemisphere 20.6
2664 Male, age 75, both hemispheres 20.1
Ventral tegmental area
nTPM: 22.2
1915 Female, age 42, unknown 23.2
2218 Male, age 76, both hemispheres 22.8
2410 Female, age 72, unknown 22.6
2021 Male, age 53, unknown 22.0
2223 Female, age 72, unknown 21.4
1942 Male, age 51, unknown 21.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.6
Samples: 139

Max nTPM: 34.3
Min nTPM: 12.8
Std nTPM: 3.5
Median nTPM: 20.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 34.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 29.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 29.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 27.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 27.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 27.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 26.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 26.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 26.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 26.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 26.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.0
FF:10158-103A5 76 years, female 29.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.2
Pig sample Sample description nTPM
Midbrain
nTPM: 16.3
Samples: 4

Max nTPM: 19.3
Min nTPM: 14.2
Sample A Female 14.2
Sample B Female 14.6
Sample C Male 19.3
Sample D Male 16.9
Periaqueductal gray
nTPM: 15.5
Samples: 3

Max nTPM: 18.6
Min nTPM: 13.6
Sample B Female 13.6
Sample C Male 18.6
Sample D Male 14.2
Substantia nigra
nTPM: 17.2
Samples: 4

Max nTPM: 22.4
Min nTPM: 12.2
Sample A Female 20.2
Sample B Female 13.9
Sample C Male 22.4
Sample D Male 12.2
Superior colliculi
nTPM: 17.2
Samples: 4

Max nTPM: 21.5
Min nTPM: 15.2
Sample A Female 21.5
Sample B Female 15.6
Sample C Male 16.6
Sample D Male 15.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.5
Samples: 4

Max nTPM: 36.5
Min nTPM: 31.9
Sample A Male 33.8
Sample B Male 31.9
Sample C Female 36.5
Sample D Female 31.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
80514095 Antisense, RP_080424_02_B03, Mouse strain C57BL/6J (56 days, male) 0.1
71723997 Antisense, RP_050921_01_C10, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.