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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:40.5 nTPM
HPA:40.5 nTPM
GTEx:47.2 nTPM
FANTOM5:131.2 Scaled Tags Per Million
Pig:76.0 nTPM
Mouse:245.8 nTPM
Allen mouse:14.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA055140Antibody HPA061953
Glial cells Not detectedHigh
Neuronal cells Not detectedHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 40.5
Sample id Sample description nTPM
Hippocampus
nTPM: 36.3
1898 Male, age 80, left hemisphere 47.0
2621 Female, age 67, right hemisphere 37.0
2529 Female, age 94, left hemisphere 34.9
1855 Male, age 76, left hemisphere 33.5
1911 Female, age 85, right hemisphere 33.2
2148 Female, age 91, left hemisphere 32.1
Dentate gyrus
nTPM: 35.4
2010 Male, age 76, both hemispheres 39.9
2530 Female, age 94, left hemisphere 37.1
1927 Female, age 91, both hemispheres 36.1
2246 Female, age 85, both hemispheres 35.6
2528 Male, age 74, both hemispheres 32.9
2531 Female, age 67, both hemispheres 30.7
Entorhinal gyrus
nTPM: 37.6
2764 Male, age 80, right hemisphere 46.4
1938 Female, age 85, left hemisphere 39.1
1787 Male, age 76, left hemisphere 36.9
2117 Female, age 91, right hemisphere 35.7
2613 Female, age 94, left hemisphere 35.5
2686 Male, age 75, right hemisphere 32.0
Hippocampus, CA1
nTPM: 39.0
2749 Male, age 80, left hemisphere 54.3
1873 Female, age 85, both hemispheres 38.8
2527 Male, age 74, both hemispheres 36.4
2045 Male, age 76, both hemispheres 32.9
2082 Female, age 91, right hemisphere 32.7
Hippocampus, CA2
nTPM: 38.5
1892 Male, age 76, both hemispheres 45.3
1963 Male, age 80, left hemisphere 44.9
2249 Male, age 74, both hemispheres 42.6
1940 Female, age 85, left hemisphere 33.6
2437 Female, age 94, left hemisphere 33.1
2113 Female, age 91, right hemisphere 31.4
Hippocampus, CA3
nTPM: 39.2
2436 Male, age 74, both hemispheres 53.2
2137 Male, age 80, left hemisphere 45.0
1867 Male, age 76, both hemispheres 40.8
1891 Female, age 85, both hemispheres 36.0
2620 Female, age 94, left hemisphere 32.3
2861 Female, age 67, both hemispheres 27.8
Parahippocampal cortex
nTPM: 35.7
1850 Male, age 80, both hemispheres 44.2
1990 Female, age 91, right hemisphere 37.7
1933 Female, age 85, both hemispheres 36.7
2532 Female, age 72, left hemisphere 35.9
2018 Male, age 76, both hemispheres 35.8
2250 Female, age 67, right hemisphere 35.8
2245 Female, age 91, both hemispheres 35.4
2692 Male, age 74, both hemispheres 33.2
2693 Female, age 94, both hemispheres 32.3
2622 Female, age 67, right hemisphere 29.6
Perirhinal gyrus
nTPM: 40.5
1794 Male, age 80, right hemisphere 46.9
1847 Female, age 91, left hemisphere 42.9
1841 Female, age 85, right hemisphere 38.8
2521 Female, age 94, right hemisphere 38.5
2848 Male, age 76, right hemisphere 35.5
Subiculum
nTPM: 35.0
1901 Male, age 80, both hemispheres 43.4
1977 Female, age 85, both hemispheres 40.1
2042 Male, age 76, both hemispheres 34.8
2619 Male, age 74, both hemispheres 32.9
2438 Female, age 94, left hemisphere 29.5
2729 Female, age 91, right hemisphere 29.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 47.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 47.2
Samples: 197

Max nTPM: 84.6
Min nTPM: 22.5
Std nTPM: 14.6
Median nTPM: 45.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 84.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 84.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 84.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 83.8
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 79.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 77.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 76.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 75.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 75.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 74.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 72.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 131.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 131.2
FF:10169-103B7 60 years, female 154.8
FF:10153-102I9 76 years, female 107.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 76.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 76.0
Samples: 4

Max nTPM: 94.9
Min nTPM: 57.2
Sample A Female 94.9
Sample B Female 74.6
Sample C Male 77.3
Sample D Male 57.2
Entorhinal cortex
nTPM: 66.0
Samples: 4

Max nTPM: 85.3
Min nTPM: 53.3
Sample A Female 66.6
Sample B Female 85.3
Sample C Male 58.9
Sample D Male 53.3
Subiculum
nTPM: 57.5
Samples: 4

Max nTPM: 75.2
Min nTPM: 47.4
Sample A Female 75.2
Sample B Female 56.1
Sample C Male 51.4
Sample D Male 47.4
Ventral hippocampus
nTPM: 68.4
Samples: 4

Max nTPM: 78.7
Min nTPM: 48.6
Sample A Female 72.3
Sample B Female 48.6
Sample C Male 78.7
Sample D Male 73.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 245.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 230.2
Samples: 4

Max nTPM: 240.4
Min nTPM: 213.2
Sample A Male 230.2
Sample B Male 236.9
Sample C Female 240.4
Sample D Female 213.2
Hippocampal formation
nTPM: 245.8
Samples: 4

Max nTPM: 267.4
Min nTPM: 225.6
Sample A Male 267.4
Sample B Male 225.6
Sample C Female 245.7
Sample D Female 244.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.8
74818622 Antisense, RP_060315_02_B01, Mouse strain C57BL/6J (56 days, male) 15.5
634469 Antisense, RP_040914_01_B09, Mouse strain C57BL/6J (56 days, male) 14.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.