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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.6 nTPM
HPA:29.6 nTPM
GTEx:26.3 nTPM
FANTOM5:97.7 Scaled Tags Per Million
Pig:19.8 nTPM
Mouse:73.2 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.7
1830 Male, age 51, unknown 31.9
1870 Female, age 42, unknown 31.7
1833 Male, age 53, unknown 31.0
2411 Female, age 72, unknown 31.0
2586 Male, age 75, left hemisphere 29.7
1827 Male, age 72, unknown 27.6
2019 Male, age 18, unknown 27.2
2828 Female, age 72, unknown 26.4
2666 Male, age 74, left hemisphere 26.0
2219 Male, age 76, both hemispheres 24.9
Dorsal raphe nucleus
nTPM: 26.9
2016 Female, age 72, unknown 28.9
2750 Male, age 76, both hemispheres 26.9
2298 Female, age 72, unknown 26.6
2047 Male, age 72, unknown 26.2
1828 Male, age 53, unknown 25.7
Inferior colliculus
nTPM: 28.1
2097 Female, age 72, unknown 29.0
2849 Male, age 72, unknown 28.1
1848 Female, age 42, unknown 27.8
1890 Male, age 53, unknown 27.4
Median raphe nucleus
nTPM: 25.1
2220 Male, age 76, midline 25.1
Pedunculopontine tegmental nucleus
nTPM: 25.9
2334 Male, age 80, both hemispheres 28.4
1921 Female, age 85, both hemispheres 26.0
2338 Male, age 61, both hemispheres 23.2
Periaquaductal grey, anterior
nTPM: 28.2
2502 Female, age 75, unknown 30.9
1947 Male, age 18, unknown 29.8
1795 Male, age 51, unknown 23.9
Periaquaductal grey, dorsal
nTPM: 27.0
2464 Female, age 72, unknown 29.8
1840 Male, age 53, unknown 28.6
1831 Male, age 72, unknown 24.9
2850 Male, age 76, both hemispheres 24.8
Periaquaductal grey, lateral
nTPM: 26.1
2053 Male, age 18, unknown 27.3
2272 Male, age 74, both hemispheres 26.4
2140 Male, age 76, both hemispheres 24.7
Pretectal area
nTPM: 26.6
2407 Male, age 75, both hemispheres 30.2
2273 Male, age 74, both hemispheres 29.0
2825 Male, age 18, unknown 27.8
2224 Female, age 72, unknown 27.4
1815 Male, age 53, unknown 27.1
1817 Female, age 42, unknown 26.4
2667 Female, age 75, unknown 26.1
2007 Male, age 72, unknown 25.8
2316 Male, age 76, right hemisphere 25.3
1944 Female, age 72, unknown 24.7
1816 Male, age 51, unknown 23.3
Red nucleus
nTPM: 29.1
2503 Female, age 72, unknown 31.5
1821 Female, age 72, unknown 31.0
1865 Male, age 51, unknown 30.6
1954 Female, age 42, unknown 30.6
1904 Male, age 53, unknown 30.3
2588 Male, age 74, left hemisphere 29.2
2584 Male, age 75, left hemisphere 29.0
2227 Male, age 72, unknown 28.3
2769 Male, age 72, unknown 28.1
2725 Female, age 75, unknown 28.0
2785 Male, age 18, unknown 27.9
2823 Male, age 76, right hemisphere 24.5
Substantia nigra
nTPM: 29.6
2241 Male, age 72, unknown 35.2
1851 Male, age 51, unknown 31.1
2583 Male, age 75, right hemisphere 30.9
2699 Male, age 18, unknown 30.7
1916 Female, age 42, unknown 30.2
1941 Male, age 53, unknown 29.8
2409 Female, age 72, unknown 28.7
1889 Female, age 72, unknown 27.6
2590 Female, age 75, unknown 26.4
2665 Male, age 74, both hemispheres 25.8
Superior colliculus
nTPM: 28.2
2664 Male, age 75, both hemispheres 31.7
1839 Male, age 51, unknown 30.0
2668 Female, age 75, unknown 30.0
2587 Male, age 74, left hemisphere 29.8
1995 Male, age 72, unknown 29.7
1913 Female, age 42, unknown 28.2
1895 Male, age 76, right hemisphere 26.5
1796 Male, age 53, unknown 26.4
2261 Male, age 18, unknown 25.3
2087 Female, age 72, unknown 24.5
Ventral tegmental area
nTPM: 29.1
2410 Female, age 72, unknown 31.1
2223 Female, age 72, unknown 30.7
1915 Female, age 42, unknown 30.3
1942 Male, age 51, unknown 29.6
2021 Male, age 53, unknown 26.7
2218 Male, age 76, both hemispheres 26.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.3
Samples: 139

Max nTPM: 41.4
Min nTPM: 15.6
Std nTPM: 4.5
Median nTPM: 25.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 41.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 40.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 37.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 36.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 36.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 36.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 35.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 34.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 33.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 33.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 32.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.7
FF:10158-103A5 76 years, female 97.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.8
Pig sample Sample description nTPM
Midbrain
nTPM: 19.8
Samples: 4

Max nTPM: 23.0
Min nTPM: 17.4
Sample A Female 23.0
Sample B Female 20.1
Sample C Male 17.4
Sample D Male 18.8
Periaqueductal gray
nTPM: 18.9
Samples: 3

Max nTPM: 21.0
Min nTPM: 16.3
Sample B Female 21.0
Sample C Male 16.3
Sample D Male 19.4
Substantia nigra
nTPM: 19.0
Samples: 4

Max nTPM: 24.2
Min nTPM: 15.3
Sample A Female 17.9
Sample B Female 18.4
Sample C Male 15.3
Sample D Male 24.2
Superior colliculi
nTPM: 17.5
Samples: 4

Max nTPM: 19.6
Min nTPM: 16.3
Sample A Female 16.3
Sample B Female 16.5
Sample C Male 19.6
Sample D Male 17.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 73.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 73.2
Samples: 4

Max nTPM: 75.9
Min nTPM: 71.1
Sample A Male 73.8
Sample B Male 71.1
Sample C Female 72.0
Sample D Female 75.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
70527981 Antisense, RP_050623_01_E11, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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