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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:22.1 nTPM
HPA:22.1 nTPM
GTEx:26.0 nTPM
FANTOM5:48.6 Scaled Tags Per Million
Pig:109.0 nTPM
Mouse:178.3 nTPM
Allen mouse:18.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA011916
Glial cells Not detected
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 22.1
Sample id Sample description nTPM
Hippocampus
nTPM: 12.2
1898 Male, age 80, left hemisphere 24.5
2621 Female, age 67, right hemisphere 21.8
1855 Male, age 76, left hemisphere 18.0
2148 Female, age 91, left hemisphere 8.5
1911 Female, age 85, right hemisphere 0.4
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 11.8
1927 Female, age 91, both hemispheres 22.9
2010 Male, age 76, both hemispheres 17.0
2530 Female, age 94, left hemisphere 12.9
2246 Female, age 85, both hemispheres 12.4
2531 Female, age 67, both hemispheres 2.9
2528 Male, age 74, both hemispheres 2.8
Entorhinal gyrus
nTPM: 12.8
2613 Female, age 94, left hemisphere 26.9
2764 Male, age 80, right hemisphere 20.1
1938 Female, age 85, left hemisphere 17.5
1787 Male, age 76, left hemisphere 12.5
2117 Female, age 91, right hemisphere 0.0
2686 Male, age 75, right hemisphere 0.0
Hippocampus, CA1
nTPM: 15.4
2749 Male, age 80, left hemisphere 46.8
1873 Female, age 85, both hemispheres 21.0
2045 Male, age 76, both hemispheres 5.7
2527 Male, age 74, both hemispheres 3.6
2082 Female, age 91, right hemisphere 0.0
Hippocampus, CA2
nTPM: 11.8
1892 Male, age 76, both hemispheres 28.3
1963 Male, age 80, left hemisphere 24.9
2437 Female, age 94, left hemisphere 10.4
1940 Female, age 85, left hemisphere 3.4
2249 Male, age 74, both hemispheres 3.4
2113 Female, age 91, right hemisphere 0.7
Hippocampus, CA3
nTPM: 12.4
2137 Male, age 80, left hemisphere 24.9
2620 Female, age 94, left hemisphere 16.2
1867 Male, age 76, both hemispheres 13.0
2436 Male, age 74, both hemispheres 10.3
2861 Female, age 67, both hemispheres 7.7
1891 Female, age 85, both hemispheres 2.0
Parahippocampal cortex
nTPM: 14.4
2245 Female, age 91, both hemispheres 24.2
1850 Male, age 80, both hemispheres 20.5
1990 Female, age 91, right hemisphere 19.2
2532 Female, age 72, left hemisphere 18.2
1933 Female, age 85, both hemispheres 17.6
2693 Female, age 94, both hemispheres 14.5
2250 Female, age 67, right hemisphere 13.6
2622 Female, age 67, right hemisphere 12.2
2692 Male, age 74, both hemispheres 4.0
2018 Male, age 76, both hemispheres 0.0
Perirhinal gyrus
nTPM: 22.1
1847 Female, age 91, left hemisphere 37.4
2521 Female, age 94, right hemisphere 28.2
1794 Male, age 80, right hemisphere 21.9
1841 Female, age 85, right hemisphere 13.8
2848 Male, age 76, right hemisphere 9.1
Subiculum
nTPM: 6.4
1901 Male, age 80, both hemispheres 12.9
1977 Female, age 85, both hemispheres 12.1
2438 Female, age 94, left hemisphere 7.5
2619 Male, age 74, both hemispheres 6.1
2042 Male, age 76, both hemispheres 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.0
Samples: 197

Max nTPM: 100.8
Min nTPM: 7.3
Std nTPM: 15.5
Median nTPM: 21.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 100.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 68.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 67.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 65.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 64.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 61.6
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 59.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 58.2
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 57.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 57.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 56.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 48.6
FF:10169-103B7 60 years, female 57.5
FF:10153-102I9 76 years, female 39.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 109.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 109.0
Samples: 4

Max nTPM: 146.3
Min nTPM: 73.0
Sample A Female 146.3
Sample B Female 118.2
Sample C Male 98.5
Sample D Male 73.0
Entorhinal cortex
nTPM: 79.7
Samples: 4

Max nTPM: 86.7
Min nTPM: 73.7
Sample A Female 86.7
Sample B Female 79.7
Sample C Male 73.7
Sample D Male 78.5
Subiculum
nTPM: 83.4
Samples: 4

Max nTPM: 112.7
Min nTPM: 66.4
Sample A Female 112.7
Sample B Female 68.1
Sample C Male 86.4
Sample D Male 66.4
Ventral hippocampus
nTPM: 97.7
Samples: 4

Max nTPM: 119.3
Min nTPM: 63.0
Sample A Female 113.2
Sample B Female 63.0
Sample C Male 95.2
Sample D Male 119.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 178.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 168.1
Samples: 4

Max nTPM: 219.0
Min nTPM: 144.0
Sample A Male 144.0
Sample B Male 149.6
Sample C Female 159.9
Sample D Female 219.0
Hippocampal formation
nTPM: 178.3
Samples: 4

Max nTPM: 211.7
Min nTPM: 149.2
Sample A Male 149.2
Sample B Male 199.9
Sample C Female 211.7
Sample D Female 152.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 18.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 18.2
1288 Antisense, RP_Baylor_253982, Mouse strain C57BL/6J (56 days, male) 18.2
1287 Antisense, RP_Baylor_253982, Mouse strain C57BL/6J (56 days, male) 16.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.