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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.5 nTPM
HPA:43.5 nTPM
GTEx:46.1 nTPM
FANTOM5:162.5 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.1
2666 Male, age 74, left hemisphere 57.9
1827 Male, age 72, unknown 38.8
2828 Female, age 72, unknown 38.6
2219 Male, age 76, both hemispheres 32.8
2586 Male, age 75, left hemisphere 19.7
1870 Female, age 42, unknown 12.9
2019 Male, age 18, unknown 7.3
1830 Male, age 51, unknown 2.4
2411 Female, age 72, unknown 0.4
1833 Male, age 53, unknown 0.3
Dorsal raphe nucleus
nTPM: 19.4
2047 Male, age 72, unknown 40.0
2750 Male, age 76, both hemispheres 22.4
2298 Female, age 72, unknown 21.1
1828 Male, age 53, unknown 12.8
2016 Female, age 72, unknown 0.9
Inferior colliculus
nTPM: 17.8
2097 Female, age 72, unknown 27.6
2849 Male, age 72, unknown 17.8
1890 Male, age 53, unknown 17.7
1848 Female, age 42, unknown 8.0
Median raphe nucleus
nTPM: 38.8
2220 Male, age 76, midline 38.8
Pedunculopontine tegmental nucleus
nTPM: 13.0
2338 Male, age 61, both hemispheres 19.7
1921 Female, age 85, both hemispheres 14.3
2334 Male, age 80, both hemispheres 5.0
Periaquaductal grey, anterior
nTPM: 43.5
1795 Male, age 51, unknown 71.2
1947 Male, age 18, unknown 35.9
2502 Female, age 75, unknown 23.5
Periaquaductal grey, dorsal
nTPM: 17.3
1831 Male, age 72, unknown 27.6
2850 Male, age 76, both hemispheres 26.7
1840 Male, age 53, unknown 13.0
2464 Female, age 72, unknown 2.1
Periaquaductal grey, lateral
nTPM: 18.1
2140 Male, age 76, both hemispheres 22.7
2272 Male, age 74, both hemispheres 17.4
2053 Male, age 18, unknown 14.3
Pretectal area
nTPM: 33.2
1816 Male, age 51, unknown 60.6
2667 Female, age 75, unknown 53.5
1944 Female, age 72, unknown 43.8
2007 Male, age 72, unknown 39.4
1817 Female, age 42, unknown 36.7
1815 Male, age 53, unknown 27.8
2273 Male, age 74, both hemispheres 25.9
2825 Male, age 18, unknown 21.6
2224 Female, age 72, unknown 19.7
2407 Male, age 75, both hemispheres 18.5
2316 Male, age 76, right hemisphere 18.1
Red nucleus
nTPM: 5.3
2584 Male, age 75, left hemisphere 22.3
2725 Female, age 75, unknown 16.0
2785 Male, age 18, unknown 14.5
2588 Male, age 74, left hemisphere 5.3
2503 Female, age 72, unknown 5.2
1821 Female, age 72, unknown 0.0
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
1954 Female, age 42, unknown 0.0
2227 Male, age 72, unknown 0.0
2769 Male, age 72, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 10.2
1941 Male, age 53, unknown 39.9
1889 Female, age 72, unknown 17.6
1916 Female, age 42, unknown 14.9
2665 Male, age 74, both hemispheres 14.8
2583 Male, age 75, right hemisphere 9.1
1851 Male, age 51, unknown 4.3
2699 Male, age 18, unknown 2.0
2241 Male, age 72, unknown 0.0
2409 Female, age 72, unknown 0.0
2590 Female, age 75, unknown 0.0
Superior colliculus
nTPM: 24.9
1796 Male, age 53, unknown 42.2
2261 Male, age 18, unknown 38.0
2664 Male, age 75, both hemispheres 36.1
1839 Male, age 51, unknown 25.2
2087 Female, age 72, unknown 25.1
1913 Female, age 42, unknown 23.7
2668 Female, age 75, unknown 23.1
2587 Male, age 74, left hemisphere 15.7
1995 Male, age 72, unknown 15.5
1895 Male, age 76, right hemisphere 4.0
Ventral tegmental area
nTPM: 18.9
2223 Female, age 72, unknown 41.3
2021 Male, age 53, unknown 19.7
1942 Male, age 51, unknown 18.6
2218 Male, age 76, both hemispheres 17.3
1915 Female, age 42, unknown 16.4
2410 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.1
Samples: 139

Max nTPM: 140.5
Min nTPM: 0.0
Std nTPM: 24.8
Median nTPM: 46.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 140.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 125.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 117.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 111.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 107.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 90.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 82.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 80.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 78.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 78.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 78.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 162.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 162.5
FF:10158-103A5 76 years, female 162.5

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