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BTG2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.1 nTPM
HPA:42.1 nTPM
GTEx:46.9 nTPM
FANTOM5:121.4 Scaled Tags Per Million
Mouse:6.0 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.8
2586 Male, age 75, left hemisphere 46.5
2219 Male, age 76, both hemispheres 42.6
1833 Male, age 53, unknown 41.5
2666 Male, age 74, left hemisphere 41.4
2019 Male, age 18, unknown 40.3
1830 Male, age 51, unknown 39.0
1870 Female, age 42, unknown 38.8
2828 Female, age 72, unknown 38.5
2411 Female, age 72, unknown 35.1
1827 Male, age 72, unknown 33.8
Dorsal raphe nucleus
nTPM: 37.4
2750 Male, age 76, both hemispheres 41.0
1828 Male, age 53, unknown 38.6
2298 Female, age 72, unknown 37.2
2016 Female, age 72, unknown 36.5
2047 Male, age 72, unknown 33.4
Inferior colliculus
nTPM: 36.5
1848 Female, age 42, unknown 37.0
2849 Male, age 72, unknown 37.0
1890 Male, age 53, unknown 36.6
2097 Female, age 72, unknown 35.5
Median raphe nucleus
nTPM: 41.0
2220 Male, age 76, midline 41.0
Pedunculopontine tegmental nucleus
nTPM: 38.7
2338 Male, age 61, both hemispheres 44.4
2334 Male, age 80, both hemispheres 39.0
1921 Female, age 85, both hemispheres 32.8
Periaquaductal grey, anterior
nTPM: 37.1
1795 Male, age 51, unknown 38.7
2502 Female, age 75, unknown 38.0
1947 Male, age 18, unknown 34.6
Periaquaductal grey, dorsal
nTPM: 39.0
1831 Male, age 72, unknown 47.4
2850 Male, age 76, both hemispheres 40.8
2464 Female, age 72, unknown 34.9
1840 Male, age 53, unknown 32.8
Periaquaductal grey, lateral
nTPM: 40.7
2140 Male, age 76, both hemispheres 48.3
2053 Male, age 18, unknown 38.7
2272 Male, age 74, both hemispheres 35.2
Pretectal area
nTPM: 36.2
2316 Male, age 76, right hemisphere 41.6
1815 Male, age 53, unknown 38.6
1817 Female, age 42, unknown 38.4
2407 Male, age 75, both hemispheres 37.1
2667 Female, age 75, unknown 37.1
2825 Male, age 18, unknown 35.5
2224 Female, age 72, unknown 35.1
2007 Male, age 72, unknown 34.6
2273 Male, age 74, both hemispheres 34.0
1816 Male, age 51, unknown 33.4
1944 Female, age 72, unknown 33.3
Red nucleus
nTPM: 42.1
1904 Male, age 53, unknown 51.1
2584 Male, age 75, left hemisphere 44.0
1954 Female, age 42, unknown 43.5
1821 Female, age 72, unknown 43.3
2769 Male, age 72, unknown 42.5
2785 Male, age 18, unknown 42.5
2227 Male, age 72, unknown 42.2
1865 Male, age 51, unknown 40.9
2588 Male, age 74, left hemisphere 39.3
2725 Female, age 75, unknown 38.9
2823 Male, age 76, right hemisphere 38.7
2503 Female, age 72, unknown 37.8
Substantia nigra
nTPM: 40.2
2699 Male, age 18, unknown 48.7
2665 Male, age 74, both hemispheres 45.5
2583 Male, age 75, right hemisphere 43.7
2590 Female, age 75, unknown 43.3
1851 Male, age 51, unknown 41.9
2241 Male, age 72, unknown 37.4
2409 Female, age 72, unknown 36.8
1916 Female, age 42, unknown 36.2
1889 Female, age 72, unknown 34.9
1941 Male, age 53, unknown 34.1
Superior colliculus
nTPM: 39.0
1995 Male, age 72, unknown 46.1
1913 Female, age 42, unknown 42.7
1796 Male, age 53, unknown 40.8
1895 Male, age 76, right hemisphere 39.8
1839 Male, age 51, unknown 39.5
2587 Male, age 74, left hemisphere 37.8
2664 Male, age 75, both hemispheres 37.2
2668 Female, age 75, unknown 36.2
2261 Male, age 18, unknown 35.5
2087 Female, age 72, unknown 34.7
Ventral tegmental area
nTPM: 38.1
2218 Male, age 76, both hemispheres 41.4
1915 Female, age 42, unknown 38.7
1942 Male, age 51, unknown 38.2
2223 Female, age 72, unknown 38.0
2021 Male, age 53, unknown 36.3
2410 Female, age 72, unknown 36.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.9
Samples: 139

Max nTPM: 140.7
Min nTPM: 8.2
Std nTPM: 27.7
Median nTPM: 39.1
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 140.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 139.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 139.3
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 137.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 135.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 104.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 102.8
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 101.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 100.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 96.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 92.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 121.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 121.4
FF:10158-103A5 76 years, female 121.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.0
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.5
Sample A Male 6.0
Sample B Male 5.5
Sample C Female 5.6
Sample D Female 7.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69530684 Antisense, RP_050421_04_C12, Mouse strain C57BL/6J (56 days, male) 0.2
72283802 Antisense, RP_051027_01_B08, Mouse strain C57BL/6J (56 days, male) 0.1

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