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ALDH4A1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:82.8 nTPM
HPA:82.8 nTPM
GTEx:74.0 nTPM
FANTOM5:26.4 Scaled Tags Per Million
Pig:19.8 nTPM
Mouse:11.8 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 82.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.6
2586 Male, age 75, left hemisphere 93.2
2828 Female, age 72, unknown 88.2
2666 Male, age 74, left hemisphere 86.6
1827 Male, age 72, unknown 75.4
1833 Male, age 53, unknown 75.3
2411 Female, age 72, unknown 70.9
1830 Male, age 51, unknown 70.3
2219 Male, age 76, both hemispheres 69.7
1870 Female, age 42, unknown 68.2
2019 Male, age 18, unknown 68.0
Dorsal raphe nucleus
nTPM: 73.0
2047 Male, age 72, unknown 78.9
1828 Male, age 53, unknown 75.7
2298 Female, age 72, unknown 71.0
2016 Female, age 72, unknown 70.8
2750 Male, age 76, both hemispheres 68.7
Inferior colliculus
nTPM: 75.7
1848 Female, age 42, unknown 84.5
2849 Male, age 72, unknown 75.3
1890 Male, age 53, unknown 75.0
2097 Female, age 72, unknown 67.8
Median raphe nucleus
nTPM: 61.9
2220 Male, age 76, midline 61.9
Pedunculopontine tegmental nucleus
nTPM: 67.5
1921 Female, age 85, both hemispheres 68.9
2338 Male, age 61, both hemispheres 68.7
2334 Male, age 80, both hemispheres 65.1
Periaquaductal grey, anterior
nTPM: 76.7
1947 Male, age 18, unknown 81.5
2502 Female, age 75, unknown 74.6
1795 Male, age 51, unknown 73.9
Periaquaductal grey, dorsal
nTPM: 70.3
2464 Female, age 72, unknown 75.4
1840 Male, age 53, unknown 75.2
2850 Male, age 76, both hemispheres 67.0
1831 Male, age 72, unknown 63.6
Periaquaductal grey, lateral
nTPM: 68.2
2140 Male, age 76, both hemispheres 72.1
2053 Male, age 18, unknown 70.9
2272 Male, age 74, both hemispheres 61.7
Pretectal area
nTPM: 74.3
1816 Male, age 51, unknown 87.0
1817 Female, age 42, unknown 83.4
1944 Female, age 72, unknown 78.9
2667 Female, age 75, unknown 78.6
1815 Male, age 53, unknown 76.7
2007 Male, age 72, unknown 75.4
2825 Male, age 18, unknown 74.0
2316 Male, age 76, right hemisphere 72.6
2224 Female, age 72, unknown 66.1
2407 Male, age 75, both hemispheres 62.7
2273 Male, age 74, both hemispheres 61.9
Red nucleus
nTPM: 82.8
2588 Male, age 74, left hemisphere 90.7
2503 Female, age 72, unknown 90.3
2769 Male, age 72, unknown 87.2
1954 Female, age 42, unknown 86.1
1904 Male, age 53, unknown 85.4
2227 Male, age 72, unknown 85.3
2823 Male, age 76, right hemisphere 85.0
1821 Female, age 72, unknown 82.6
2725 Female, age 75, unknown 79.4
1865 Male, age 51, unknown 79.0
2584 Male, age 75, left hemisphere 74.1
2785 Male, age 18, unknown 69.2
Substantia nigra
nTPM: 82.5
1916 Female, age 42, unknown 97.0
2699 Male, age 18, unknown 90.3
1851 Male, age 51, unknown 86.2
2665 Male, age 74, both hemispheres 84.8
2590 Female, age 75, unknown 82.4
2409 Female, age 72, unknown 81.1
1889 Female, age 72, unknown 80.7
2583 Male, age 75, right hemisphere 77.5
2241 Male, age 72, unknown 77.4
1941 Male, age 53, unknown 67.4
Superior colliculus
nTPM: 74.4
2087 Female, age 72, unknown 84.5
2261 Male, age 18, unknown 80.2
1796 Male, age 53, unknown 77.5
1895 Male, age 76, right hemisphere 75.4
1839 Male, age 51, unknown 73.7
2668 Female, age 75, unknown 72.5
1995 Male, age 72, unknown 72.0
2587 Male, age 74, left hemisphere 70.8
2664 Male, age 75, both hemispheres 70.4
1913 Female, age 42, unknown 67.2
Ventral tegmental area
nTPM: 73.2
1915 Female, age 42, unknown 82.8
2410 Female, age 72, unknown 79.5
2218 Male, age 76, both hemispheres 70.8
2021 Male, age 53, unknown 69.7
1942 Male, age 51, unknown 69.0
2223 Female, age 72, unknown 67.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 74.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.0
Samples: 139

Max nTPM: 240.1
Min nTPM: 7.5
Std nTPM: 44.7
Median nTPM: 62.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 240.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 197.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 195.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 191.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 190.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 186.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 169.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 165.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 158.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 149.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 147.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.4
FF:10158-103A5 76 years, female 26.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.8
Pig sample Sample description nTPM
Midbrain
nTPM: 15.2
Samples: 4

Max nTPM: 18.5
Min nTPM: 12.7
Sample A Female 18.5
Sample B Female 16.1
Sample C Male 12.7
Sample D Male 13.3
Periaqueductal gray
nTPM: 11.1
Samples: 3

Max nTPM: 13.5
Min nTPM: 9.5
Sample B Female 13.5
Sample C Male 10.4
Sample D Male 9.5
Substantia nigra
nTPM: 17.5
Samples: 4

Max nTPM: 20.5
Min nTPM: 14.0
Sample A Female 15.5
Sample B Female 20.5
Sample C Male 14.0
Sample D Male 20.1
Superior colliculi
nTPM: 19.8
Samples: 4

Max nTPM: 29.2
Min nTPM: 12.9
Sample A Female 21.4
Sample B Female 29.2
Sample C Male 12.9
Sample D Male 15.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.8
Samples: 4

Max nTPM: 12.6
Min nTPM: 10.8
Sample A Male 12.6
Sample B Male 11.7
Sample C Female 10.8
Sample D Female 11.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
69014524 Antisense, RP_050310_01_C07, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.