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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:7.3 nTPM
HPA:7.3 nTPM
GTEx:9.7 nTPM
FANTOM5:23.5 Scaled Tags Per Million
Pig:7.4 nTPM
Mouse:14.6 nTPM
Allen mouse:4.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038175Antibody HPA057587
Glial cells Not detectedNot detected
Neuronal cells Not detectedLow




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 7.3
Sample id Sample description nTPM
Hippocampus
nTPM: 2.4
2148 Female, age 91, left hemisphere 7.3
1911 Female, age 85, right hemisphere 3.6
2621 Female, age 67, right hemisphere 3.1
2529 Female, age 94, left hemisphere 0.7
1855 Male, age 76, left hemisphere 0.0
1898 Male, age 80, left hemisphere 0.0
Dentate gyrus
nTPM: 4.8
2531 Female, age 67, both hemispheres 10.2
2010 Male, age 76, both hemispheres 5.6
1927 Female, age 91, both hemispheres 5.4
2246 Female, age 85, both hemispheres 4.2
2528 Male, age 74, both hemispheres 3.4
2530 Female, age 94, left hemisphere 0.0
Entorhinal gyrus
nTPM: 6.4
2613 Female, age 94, left hemisphere 12.4
2686 Male, age 75, right hemisphere 11.8
2764 Male, age 80, right hemisphere 8.2
1938 Female, age 85, left hemisphere 4.3
1787 Male, age 76, left hemisphere 2.0
2117 Female, age 91, right hemisphere 0.0
Hippocampus, CA1
nTPM: 5.3
2749 Male, age 80, left hemisphere 11.3
2045 Male, age 76, both hemispheres 7.0
2527 Male, age 74, both hemispheres 3.9
2082 Female, age 91, right hemisphere 3.2
1873 Female, age 85, both hemispheres 1.0
Hippocampus, CA2
nTPM: 2.5
1940 Female, age 85, left hemisphere 5.2
2437 Female, age 94, left hemisphere 4.5
2113 Female, age 91, right hemisphere 2.9
2249 Male, age 74, both hemispheres 2.3
1892 Male, age 76, both hemispheres 0.0
1963 Male, age 80, left hemisphere 0.0
Hippocampus, CA3
nTPM: 7.3
2620 Female, age 94, left hemisphere 14.3
2137 Male, age 80, left hemisphere 11.1
2861 Female, age 67, both hemispheres 11.0
2436 Male, age 74, both hemispheres 7.2
1867 Male, age 76, both hemispheres 0.0
1891 Female, age 85, both hemispheres 0.0
Parahippocampal cortex
nTPM: 6.4
2622 Female, age 67, right hemisphere 16.2
2692 Male, age 74, both hemispheres 7.9
2693 Female, age 94, both hemispheres 7.3
2018 Male, age 76, both hemispheres 6.7
2245 Female, age 91, both hemispheres 5.6
2532 Female, age 72, left hemisphere 5.3
1933 Female, age 85, both hemispheres 4.8
1990 Female, age 91, right hemisphere 4.6
2250 Female, age 67, right hemisphere 2.8
1850 Male, age 80, both hemispheres 2.6
Perirhinal gyrus
nTPM: 2.9
1794 Male, age 80, right hemisphere 4.5
2521 Female, age 94, right hemisphere 4.5
1841 Female, age 85, right hemisphere 3.8
1847 Female, age 91, left hemisphere 1.9
2848 Male, age 76, right hemisphere 0.0
Subiculum
nTPM: 3.0
2619 Male, age 74, both hemispheres 5.1
1901 Male, age 80, both hemispheres 3.5
2729 Female, age 91, right hemisphere 3.5
1977 Female, age 85, both hemispheres 2.8
2042 Male, age 76, both hemispheres 1.6
2438 Female, age 94, left hemisphere 1.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 9.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.7
Samples: 197

Max nTPM: 21.1
Min nTPM: 3.2
Std nTPM: 3.3
Median nTPM: 9.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 21.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 19.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 18.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 18.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 17.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 16.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 16.7
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 16.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 16.1
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 15.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 15.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 23.5
FF:10169-103B7 60 years, female 25.1
FF:10153-102I9 76 years, female 22.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 7.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 5.8
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.2
Sample A Female 6.7
Sample B Female 6.5
Sample C Male 4.2
Sample D Male 5.6
Entorhinal cortex
nTPM: 7.4
Samples: 4

Max nTPM: 8.1
Min nTPM: 6.7
Sample A Female 8.1
Sample B Female 6.7
Sample C Male 7.0
Sample D Male 7.8
Subiculum
nTPM: 4.9
Samples: 4

Max nTPM: 6.9
Min nTPM: 3.7
Sample A Female 6.9
Sample B Female 4.1
Sample C Male 4.9
Sample D Male 3.7
Ventral hippocampus
nTPM: 5.7
Samples: 4

Max nTPM: 8.7
Min nTPM: 3.5
Sample A Female 4.4
Sample B Female 3.5
Sample C Male 6.1
Sample D Male 8.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 14.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 14.6
Samples: 4

Max nTPM: 15.4
Min nTPM: 13.0
Sample A Male 15.2
Sample B Male 15.4
Sample C Female 13.0
Sample D Female 14.9
Hippocampal formation
nTPM: 11.2
Samples: 4

Max nTPM: 11.9
Min nTPM: 10.6
Sample A Male 11.9
Sample B Male 11.4
Sample C Female 10.6
Sample D Female 10.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.8
69262292 Antisense, RP_050303_01_F09, Mouse strain C57BL/6J (56 days, male) 5.3
75934919 Antisense, RP_060530_01_E11, Mouse strain C57BL/6J (56 days, male) 4.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.