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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:106.6 nTPM
HPA:106.6 nTPM
GTEx:101.0 nTPM
FANTOM5:132.1 Scaled Tags Per Million
Pig:42.1 nTPM
Mouse:60.3 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 106.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 101.4
2586 Male, age 75, left hemisphere 112.8
1827 Male, age 72, unknown 103.9
1870 Female, age 42, unknown 103.2
2666 Male, age 74, left hemisphere 102.7
2828 Female, age 72, unknown 99.9
2019 Male, age 18, unknown 99.7
1833 Male, age 53, unknown 98.8
2411 Female, age 72, unknown 98.1
1830 Male, age 51, unknown 97.7
2219 Male, age 76, both hemispheres 97.5
Dorsal raphe nucleus
nTPM: 102.7
2047 Male, age 72, unknown 106.6
2750 Male, age 76, both hemispheres 103.5
2298 Female, age 72, unknown 102.5
1828 Male, age 53, unknown 101.4
2016 Female, age 72, unknown 99.3
Inferior colliculus
nTPM: 102.3
1848 Female, age 42, unknown 103.2
2849 Male, age 72, unknown 103.0
1890 Male, age 53, unknown 101.7
2097 Female, age 72, unknown 101.3
Median raphe nucleus
nTPM: 106.6
2220 Male, age 76, midline 106.6
Pedunculopontine tegmental nucleus
nTPM: 101.7
2334 Male, age 80, both hemispheres 105.8
1921 Female, age 85, both hemispheres 100.6
2338 Male, age 61, both hemispheres 98.6
Periaquaductal grey, anterior
nTPM: 104.8
1947 Male, age 18, unknown 108.8
2502 Female, age 75, unknown 102.9
1795 Male, age 51, unknown 102.7
Periaquaductal grey, dorsal
nTPM: 98.7
1840 Male, age 53, unknown 103.5
2850 Male, age 76, both hemispheres 100.9
1831 Male, age 72, unknown 96.8
2464 Female, age 72, unknown 93.7
Periaquaductal grey, lateral
nTPM: 99.1
2140 Male, age 76, both hemispheres 100.9
2272 Male, age 74, both hemispheres 99.6
2053 Male, age 18, unknown 96.6
Pretectal area
nTPM: 101.9
2007 Male, age 72, unknown 107.9
1816 Male, age 51, unknown 106.8
1817 Female, age 42, unknown 106.6
1944 Female, age 72, unknown 103.6
1815 Male, age 53, unknown 101.7
2825 Male, age 18, unknown 100.5
2407 Male, age 75, both hemispheres 100.3
2224 Female, age 72, unknown 100.1
2667 Female, age 75, unknown 99.4
2273 Male, age 74, both hemispheres 97.6
2316 Male, age 76, right hemisphere 96.1
Red nucleus
nTPM: 99.2
2584 Male, age 75, left hemisphere 103.6
2588 Male, age 74, left hemisphere 103.1
2785 Male, age 18, unknown 101.9
1821 Female, age 72, unknown 101.8
2725 Female, age 75, unknown 100.7
2227 Male, age 72, unknown 98.8
2769 Male, age 72, unknown 98.2
1954 Female, age 42, unknown 97.9
2503 Female, age 72, unknown 97.6
2823 Male, age 76, right hemisphere 95.9
1904 Male, age 53, unknown 95.8
1865 Male, age 51, unknown 95.1
Substantia nigra
nTPM: 104.8
1916 Female, age 42, unknown 114.2
2665 Male, age 74, both hemispheres 108.8
1941 Male, age 53, unknown 107.3
1851 Male, age 51, unknown 106.4
1889 Female, age 72, unknown 104.0
2583 Male, age 75, right hemisphere 103.9
2699 Male, age 18, unknown 102.7
2241 Male, age 72, unknown 102.4
2590 Female, age 75, unknown 100.9
2409 Female, age 72, unknown 97.2
Superior colliculus
nTPM: 100.0
2668 Female, age 75, unknown 106.1
1796 Male, age 53, unknown 102.7
1839 Male, age 51, unknown 102.2
2664 Male, age 75, both hemispheres 102.2
2261 Male, age 18, unknown 100.4
1895 Male, age 76, right hemisphere 99.7
2087 Female, age 72, unknown 99.0
2587 Male, age 74, left hemisphere 98.7
1913 Female, age 42, unknown 95.6
1995 Male, age 72, unknown 93.2
Ventral tegmental area
nTPM: 103.2
1915 Female, age 42, unknown 107.3
2218 Male, age 76, both hemispheres 104.7
1942 Male, age 51, unknown 104.5
2410 Female, age 72, unknown 101.4
2021 Male, age 53, unknown 100.7
2223 Female, age 72, unknown 100.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 101.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 101.0
Samples: 139

Max nTPM: 158.4
Min nTPM: 69.1
Std nTPM: 17.0
Median nTPM: 99.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 158.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 156.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 152.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 148.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 146.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 140.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 134.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 132.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 127.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 125.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 122.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 132.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 132.1
FF:10158-103A5 76 years, female 132.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.1
Pig sample Sample description nTPM
Midbrain
nTPM: 40.2
Samples: 4

Max nTPM: 52.4
Min nTPM: 32.9
Sample A Female 52.4
Sample B Female 32.9
Sample C Male 36.7
Sample D Male 38.7
Periaqueductal gray
nTPM: 33.4
Samples: 3

Max nTPM: 40.2
Min nTPM: 29.1
Sample B Female 29.1
Sample C Male 40.2
Sample D Male 31.0
Substantia nigra
nTPM: 34.5
Samples: 4

Max nTPM: 45.8
Min nTPM: 27.8
Sample A Female 45.8
Sample B Female 29.5
Sample C Male 34.8
Sample D Male 27.8
Superior colliculi
nTPM: 42.1
Samples: 4

Max nTPM: 53.2
Min nTPM: 35.2
Sample A Female 53.2
Sample B Female 35.2
Sample C Male 42.2
Sample D Male 37.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.3
Samples: 4

Max nTPM: 67.8
Min nTPM: 56.7
Sample A Male 67.8
Sample B Male 58.8
Sample C Female 56.7
Sample D Female 57.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
70474827 Antisense, RP_050623_01_B01, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.