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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:107.4 nTPM
HPA:107.4 nTPM
GTEx:130.1 nTPM
FANTOM5:222.7 Scaled Tags Per Million
Pig:50.7 nTPM
Mouse:72.7 nTPM
Allen mouse:1.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA069290
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 107.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 106.1
2846 Female, age 79, unknown 112.5
1857 Female, age 85, left hemisphere 110.8
2290 Female, age 72, unknown 109.2
1854 Male, age 80, left hemisphere 105.3
1781 Male, age 74, unknown 105.2
2481 Female, age 94, left hemisphere 104.6
2288 Male, age 75, left hemisphere 103.1
2289 Male, age 61, right hemisphere 97.9
Claustrum
nTPM: 101.5
2198 Male, age 80, both hemispheres 106.6
2196 Female, age 79, unknown 104.7
2645 Female, age 72, unknown 103.6
2568 Male, age 61, both hemispheres 103.2
2284 Female, age 91, both hemispheres 101.7
1956 Male, age 74, unknown 101.6
2491 Male, age 75, both hemispheres 101.6
2392 Female, age 94, both hemispheres 95.5
2292 Female, age 85, both hemispheres 95.4
Globus pallidus, externus
nTPM: 101.0
2772 Female, age 79, unknown 106.8
1996 Male, age 80, right hemisphere 102.8
2395 Male, age 75, both hemispheres 100.3
2567 Female, age 72, unknown 98.7
2646 Male, age 61, right hemisphere 96.5
Globus pallidus, internus
nTPM: 99.7
2287 Male, age 75, right hemisphere 106.8
2483 Female, age 94, right hemisphere 105.4
2778 Female, age 91, both hemispheres 100.1
1818 Male, age 74, unknown 99.3
2037 Male, age 80, right hemisphere 98.8
2566 Female, age 72, unknown 97.3
2111 Female, age 85, right hemisphere 90.5
Nucleus accumbens
nTPM: 104.2
1856 Female, age 91, right hemisphere 113.4
1783 Male, age 74, unknown 109.7
1806 Female, age 85, left hemisphere 106.1
2698 Female, age 72, unknown 106.0
2286 Male, age 75, left hemisphere 102.5
2391 Female, age 94, left hemisphere 99.4
2824 Male, age 61, right hemisphere 98.8
2732 Male, age 80, right hemisphere 97.3
Nucleus basalis of Meynert
nTPM: 101.0
2393 Male, age 80, right hemisphere 103.5
2821 Male, age 75, both hemispheres 102.3
2484 Female, age 94, left hemisphere 100.2
2569 Male, age 61, both hemispheres 97.9
Nucleus of the diagonal band
nTPM: 106.4
2775 Male, age 80, right hemisphere 111.5
1812 Female, age 91, both hemispheres 108.5
2195 Female, age 85, both hemispheres 105.7
2029 Male, age 61, right hemisphere 105.5
1979 Male, age 74, unknown 101.0
Olfactory tubercle
nTPM: 103.8
1998 Female, age 91, both hemispheres 108.2
1846 Male, age 80, right hemisphere 106.9
2487 Female, age 94, left hemisphere 101.6
2856 Male, age 75, right hemisphere 98.6
Putamen
nTPM: 107.4
2466 Female, age 79, unknown 111.9
1838 Male, age 80, right hemisphere 111.2
1829 Male, age 74, unknown 108.1
1937 Female, age 91, right hemisphere 107.4
2489 Female, age 72, unknown 106.3
2482 Female, age 94, left hemisphere 104.6
2647 Male, age 75, left hemisphere 101.8
Septal nuclei
nTPM: 102.4
1960 Male, age 74, unknown 112.1
2031 Female, age 72, unknown 109.6
2009 Female, age 91, both hemispheres 104.9
2629 Female, age 94, right hemisphere 104.6
2059 Female, age 85, both hemispheres 99.4
2199 Male, age 80, right hemisphere 94.6
2394 Male, age 61, left hemisphere 91.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 130.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 117.3
Samples: 246

Max nTPM: 206.0
Min nTPM: 62.1
Std nTPM: 24.8
Median nTPM: 114.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 206.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 203.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 199.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 192.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 190.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 188.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 184.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 182.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 171.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 168.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 167.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 130.1
Samples: 246

Max nTPM: 239.2
Min nTPM: 69.4
Std nTPM: 25.4
Median nTPM: 127.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 239.2
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 202.2
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 198.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 198.8
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 196.9
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 191.3
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 188.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 188.3
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 184.6
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 183.1
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 179.4
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Brain - Putamen (basal ganglia)
Average nTPM: 124.9
Samples: 205

Max nTPM: 223.4
Min nTPM: 78.2
Std nTPM: 26.3
Median nTPM: 121.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 223.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 204.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 193.5
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 187.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 186.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 186.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 185.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 184.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 175.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 173.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 172.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 222.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 218.8
FF:10164-103B2 76 years, female 218.8
Globus pallidus
Scaled Tags Per Million: 221.2
FF:10175-103C4 60 years, female 294.4
FF:10161-103A8 76 years, female 147.9
Nucleus accumbens
Scaled Tags Per Million: 173.7
FF:10037-101F1 23-56 years, mixed 173.7
Putamen
Scaled Tags Per Million: 222.7
FF:10176-103C5 60 years, female 222.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 50.7
Pig sample Sample description nTPM
Caudate
nTPM: 48.2
Samples: 4

Max nTPM: 62.1
Min nTPM: 40.6
Sample A Female 40.6
Sample B Female 47.8
Sample C Male 62.1
Sample D Male 42.3
Putamen
nTPM: 50.6
Samples: 4

Max nTPM: 72.2
Min nTPM: 36.0
Sample A Female 36.0
Sample B Female 41.3
Sample C Male 72.2
Sample D Male 53.0
Septum
nTPM: 35.1
Samples: 4

Max nTPM: 42.9
Min nTPM: 28.7
Sample A Female 42.9
Sample B Female 36.3
Sample C Male 32.5
Sample D Male 28.7
Ventral pallidum
nTPM: 38.0
Samples: 4

Max nTPM: 41.0
Min nTPM: 32.0
Sample A Female 40.8
Sample B Female 41.0
Sample C Male 32.0
Sample D Male 38.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 72.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 64.7
Samples: 4

Max nTPM: 66.8
Min nTPM: 62.2
Sample A Male 64.3
Sample B Male 62.2
Sample C Female 65.4
Sample D Female 66.8
Septum
nTPM: 69.0
Samples: 4

Max nTPM: 78.3
Min nTPM: 59.3
Sample A Male 66.4
Sample B Male 72.0
Sample C Female 78.3
Sample D Female 59.3
Ventral forebrain
nTPM: 72.7
Samples: 4

Max nTPM: 76.7
Min nTPM: 67.9
Sample A Male 73.4
Sample B Male 67.9
Sample C Female 76.7
Sample D Female 72.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.5
70474827 Antisense, RP_050623_01_B01, Mouse strain C57BL/6J (56 days, male) 1.5
Pallidum
Expression energy: 1.2
70474827 Antisense, RP_050623_01_B01, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.