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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:39.5 nTPM
HPA:39.5 nTPM
GTEx:24.8 nTPM
FANTOM5:0.4 Scaled Tags Per Million
Mouse:23.5 nTPM
Allen mouse:0.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA001223
Glial cells Low
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.3
2481 Female, age 94, left hemisphere 40.6
2289 Male, age 61, right hemisphere 35.4
1781 Male, age 74, unknown 34.4
1854 Male, age 80, left hemisphere 30.6
2290 Female, age 72, unknown 30.6
2846 Female, age 79, unknown 29.8
1857 Female, age 85, left hemisphere 29.1
2288 Male, age 75, left hemisphere 28.3
Claustrum
nTPM: 39.5
2198 Male, age 80, both hemispheres 43.8
2568 Male, age 61, both hemispheres 42.3
2645 Female, age 72, unknown 42.2
2292 Female, age 85, both hemispheres 41.6
1956 Male, age 74, unknown 40.2
2284 Female, age 91, both hemispheres 39.6
2491 Male, age 75, both hemispheres 37.4
2392 Female, age 94, both hemispheres 35.0
2196 Female, age 79, unknown 33.8
Globus pallidus, externus
nTPM: 36.5
2646 Male, age 61, right hemisphere 45.2
1996 Male, age 80, right hemisphere 40.6
2567 Female, age 72, unknown 34.7
2772 Female, age 79, unknown 31.5
2395 Male, age 75, both hemispheres 30.3
Globus pallidus, internus
nTPM: 37.6
2111 Female, age 85, right hemisphere 41.4
2778 Female, age 91, both hemispheres 40.9
2483 Female, age 94, right hemisphere 39.9
2037 Male, age 80, right hemisphere 39.2
1818 Male, age 74, unknown 34.3
2287 Male, age 75, right hemisphere 34.1
2566 Female, age 72, unknown 33.7
Nucleus accumbens
nTPM: 31.6
2732 Male, age 80, right hemisphere 35.5
2391 Female, age 94, left hemisphere 34.8
1783 Male, age 74, unknown 30.8
1806 Female, age 85, left hemisphere 30.6
1856 Female, age 91, right hemisphere 30.4
2286 Male, age 75, left hemisphere 30.4
2824 Male, age 61, right hemisphere 30.3
2698 Female, age 72, unknown 30.2
Nucleus basalis of Meynert
nTPM: 35.5
2569 Male, age 61, both hemispheres 47.0
2484 Female, age 94, left hemisphere 34.0
2393 Male, age 80, right hemisphere 31.7
2821 Male, age 75, both hemispheres 29.2
Nucleus of the diagonal band
nTPM: 34.7
1979 Male, age 74, unknown 40.5
1812 Female, age 91, both hemispheres 35.2
2775 Male, age 80, right hemisphere 34.2
2195 Female, age 85, both hemispheres 33.7
2029 Male, age 61, right hemisphere 30.1
Olfactory tubercle
nTPM: 36.3
2856 Male, age 75, right hemisphere 38.6
1846 Male, age 80, right hemisphere 35.9
1998 Female, age 91, both hemispheres 35.6
2487 Female, age 94, left hemisphere 35.2
Putamen
nTPM: 32.1
2647 Male, age 75, left hemisphere 36.3
2482 Female, age 94, left hemisphere 35.6
2489 Female, age 72, unknown 35.1
2466 Female, age 79, unknown 30.3
1937 Female, age 91, right hemisphere 30.1
1829 Male, age 74, unknown 29.3
1838 Male, age 80, right hemisphere 28.3
Septal nuclei
nTPM: 37.0
2199 Male, age 80, right hemisphere 46.0
2059 Female, age 85, both hemispheres 41.2
2394 Male, age 61, left hemisphere 38.6
2009 Female, age 91, both hemispheres 35.7
2629 Female, age 94, right hemisphere 33.5
2031 Female, age 72, unknown 32.5
1960 Male, age 74, unknown 31.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.7
Samples: 246

Max nTPM: 69.2
Min nTPM: 0.0
Std nTPM: 12.4
Median nTPM: 20.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 69.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 67.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 48.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 48.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 47.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 46.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 46.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 45.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 44.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 44.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 42.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 20.3
Samples: 246

Max nTPM: 76.4
Min nTPM: 0.5
Std nTPM: 13.0
Median nTPM: 18.8
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 76.4
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 66.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 61.0
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 58.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 56.5
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 54.3
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 53.1
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 50.6
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 50.1
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 47.8
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 46.2
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Brain - Putamen (basal ganglia)
Average nTPM: 24.8
Samples: 205

Max nTPM: 66.2
Min nTPM: 0.6
Std nTPM: 14.7
Median nTPM: 23.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 66.2
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 62.7
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 60.5
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 57.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 56.9
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 55.5
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 54.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 54.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 54.0
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 53.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 52.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.4
FF:10164-103B2 76 years, female 0.4
Globus pallidus
Scaled Tags Per Million: 0.4
FF:10175-103C4 60 years, female 0.7
FF:10161-103A8 76 years, female 0.1
Nucleus accumbens
Scaled Tags Per Million: 0.2
FF:10037-101F1 23-56 years, mixed 0.2
Putamen
Scaled Tags Per Million: 0.4
FF:10176-103C5 60 years, female 0.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 23.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 23.3
Samples: 4

Max nTPM: 27.0
Min nTPM: 21.0
Sample A Male 21.0
Sample B Male 27.0
Sample C Female 21.0
Sample D Female 24.2
Septum
nTPM: 23.5
Samples: 4

Max nTPM: 28.9
Min nTPM: 20.4
Sample A Male 21.6
Sample B Male 28.9
Sample C Female 20.4
Sample D Female 23.2
Ventral forebrain
nTPM: 19.1
Samples: 4

Max nTPM: 20.1
Min nTPM: 18.2
Sample A Male 18.2
Sample B Male 18.9
Sample C Female 20.1
Sample D Female 19.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
68341286 Antisense, RP_041207_01_C06, Mouse strain C57BL/6J (56 days, male) 1.4
1335 Antisense, RP_Baylor_253887, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.4
68341286 Antisense, RP_041207_01_C06, Mouse strain C57BL/6J (56 days, male) 0.9
1335 Antisense, RP_Baylor_253887, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.