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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.7 nTPM
HPA:59.7 nTPM
GTEx:37.5 nTPM
FANTOM5:58.6 Scaled Tags Per Million
Pig:29.6 nTPM
Mouse:91.4 nTPM
Allen mouse:8.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.7
2586 Male, age 75, left hemisphere 69.6
2666 Male, age 74, left hemisphere 66.2
2828 Female, age 72, unknown 65.9
1827 Male, age 72, unknown 65.6
2219 Male, age 76, both hemispheres 44.9
2411 Female, age 72, unknown 42.9
2019 Male, age 18, unknown 42.3
1870 Female, age 42, unknown 38.2
1833 Male, age 53, unknown 37.6
1830 Male, age 51, unknown 34.0
Dorsal raphe nucleus
nTPM: 39.5
2047 Male, age 72, unknown 43.6
2298 Female, age 72, unknown 43.2
1828 Male, age 53, unknown 39.2
2016 Female, age 72, unknown 36.2
2750 Male, age 76, both hemispheres 35.1
Inferior colliculus
nTPM: 45.1
2097 Female, age 72, unknown 49.7
1848 Female, age 42, unknown 47.4
2849 Male, age 72, unknown 43.3
1890 Male, age 53, unknown 40.0
Median raphe nucleus
nTPM: 40.6
2220 Male, age 76, midline 40.6
Pedunculopontine tegmental nucleus
nTPM: 34.8
1921 Female, age 85, both hemispheres 40.4
2334 Male, age 80, both hemispheres 37.6
2338 Male, age 61, both hemispheres 26.2
Periaquaductal grey, anterior
nTPM: 59.7
1947 Male, age 18, unknown 67.9
2502 Female, age 75, unknown 56.7
1795 Male, age 51, unknown 54.5
Periaquaductal grey, dorsal
nTPM: 39.8
1840 Male, age 53, unknown 51.5
2464 Female, age 72, unknown 45.5
1831 Male, age 72, unknown 35.7
2850 Male, age 76, both hemispheres 26.4
Periaquaductal grey, lateral
nTPM: 30.4
2053 Male, age 18, unknown 35.9
2140 Male, age 76, both hemispheres 33.3
2272 Male, age 74, both hemispheres 22.2
Pretectal area
nTPM: 49.7
1816 Male, age 51, unknown 82.0
2007 Male, age 72, unknown 67.1
1944 Female, age 72, unknown 59.6
1817 Female, age 42, unknown 58.9
1815 Male, age 53, unknown 55.1
2667 Female, age 75, unknown 43.9
2825 Male, age 18, unknown 42.3
2407 Male, age 75, both hemispheres 40.3
2316 Male, age 76, right hemisphere 37.9
2224 Female, age 72, unknown 37.4
2273 Male, age 74, both hemispheres 22.4
Red nucleus
nTPM: 39.3
2588 Male, age 74, left hemisphere 57.8
2584 Male, age 75, left hemisphere 49.6
2725 Female, age 75, unknown 42.9
1954 Female, age 42, unknown 42.8
2785 Male, age 18, unknown 40.2
2769 Male, age 72, unknown 37.9
1821 Female, age 72, unknown 37.6
2227 Male, age 72, unknown 36.6
2503 Female, age 72, unknown 36.4
1904 Male, age 53, unknown 30.3
2823 Male, age 76, right hemisphere 29.9
1865 Male, age 51, unknown 29.3
Substantia nigra
nTPM: 52.1
1916 Female, age 42, unknown 71.7
2665 Male, age 74, both hemispheres 71.6
1889 Female, age 72, unknown 58.3
1851 Male, age 51, unknown 55.5
1941 Male, age 53, unknown 50.6
2241 Male, age 72, unknown 49.6
2590 Female, age 75, unknown 45.5
2583 Male, age 75, right hemisphere 43.6
2699 Male, age 18, unknown 38.2
2409 Female, age 72, unknown 36.2
Superior colliculus
nTPM: 49.0
2664 Male, age 75, both hemispheres 68.5
1796 Male, age 53, unknown 61.8
2087 Female, age 72, unknown 59.9
2261 Male, age 18, unknown 58.8
2668 Female, age 75, unknown 55.0
1839 Male, age 51, unknown 45.3
1895 Male, age 76, right hemisphere 43.3
2587 Male, age 74, left hemisphere 41.0
1913 Female, age 42, unknown 29.2
1995 Male, age 72, unknown 26.8
Ventral tegmental area
nTPM: 44.9
1915 Female, age 42, unknown 51.4
2410 Female, age 72, unknown 50.9
1942 Male, age 51, unknown 48.7
2218 Male, age 76, both hemispheres 48.1
2021 Male, age 53, unknown 41.0
2223 Female, age 72, unknown 29.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.5
Samples: 139

Max nTPM: 75.8
Min nTPM: 10.5
Std nTPM: 13.9
Median nTPM: 36.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 75.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 64.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 64.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 63.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 62.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 62.2
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 60.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 60.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 59.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 58.8
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 58.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.6
FF:10158-103A5 76 years, female 58.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.6
Pig sample Sample description nTPM
Midbrain
nTPM: 27.1
Samples: 4

Max nTPM: 38.5
Min nTPM: 9.6
Sample A Female 9.6
Sample B Female 22.3
Sample C Male 38.5
Sample D Male 37.9
Periaqueductal gray
nTPM: 23.1
Samples: 3

Max nTPM: 26.4
Min nTPM: 18.9
Sample B Female 23.9
Sample C Male 26.4
Sample D Male 18.9
Substantia nigra
nTPM: 23.7
Samples: 4

Max nTPM: 34.0
Min nTPM: 12.1
Sample A Female 34.0
Sample B Female 18.1
Sample C Male 30.4
Sample D Male 12.1
Superior colliculi
nTPM: 29.6
Samples: 4

Max nTPM: 38.5
Min nTPM: 18.7
Sample A Female 30.2
Sample B Female 18.7
Sample C Male 30.9
Sample D Male 38.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 91.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.4
Samples: 4

Max nTPM: 99.3
Min nTPM: 85.6
Sample A Male 85.6
Sample B Male 87.2
Sample C Female 99.3
Sample D Female 93.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.1
68445997 Antisense, RP_050113_01_D01, Mouse strain C57BL/6J (56 days, male) 18.5
70919322 Antisense, RP_050713_01_B02, Mouse strain C57BL/6J (56 days, male) 4.7
70723670 Antisense, RP_050705_01_E12, Mouse strain C57BL/6J (56 days, male) 1.3
73512188 Antisense, RP_050705_01_E12, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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