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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:257.8 nTPM
HPA:257.8 nTPM
GTEx:56.8 nTPM
FANTOM5:213.5 Scaled Tags Per Million
Pig:91.2 nTPM
Mouse:102.2 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 257.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 248.0
1870 Female, age 42, unknown 255.8
2411 Female, age 72, unknown 250.6
2828 Female, age 72, unknown 250.4
1827 Male, age 72, unknown 250.0
2019 Male, age 18, unknown 248.6
1830 Male, age 51, unknown 246.0
2666 Male, age 74, left hemisphere 245.5
2586 Male, age 75, left hemisphere 245.2
1833 Male, age 53, unknown 244.9
2219 Male, age 76, both hemispheres 243.3
Dorsal raphe nucleus
nTPM: 254.3
2047 Male, age 72, unknown 259.6
2298 Female, age 72, unknown 255.6
1828 Male, age 53, unknown 253.8
2750 Male, age 76, both hemispheres 251.8
2016 Female, age 72, unknown 250.7
Inferior colliculus
nTPM: 250.5
1890 Male, age 53, unknown 253.1
2097 Female, age 72, unknown 252.3
1848 Female, age 42, unknown 248.4
2849 Male, age 72, unknown 248.4
Median raphe nucleus
nTPM: 257.8
2220 Male, age 76, midline 257.8
Pedunculopontine tegmental nucleus
nTPM: 254.8
2338 Male, age 61, both hemispheres 268.5
2334 Male, age 80, both hemispheres 250.3
1921 Female, age 85, both hemispheres 245.5
Periaquaductal grey, anterior
nTPM: 250.0
1947 Male, age 18, unknown 251.1
2502 Female, age 75, unknown 249.8
1795 Male, age 51, unknown 249.0
Periaquaductal grey, dorsal
nTPM: 250.7
2850 Male, age 76, both hemispheres 256.2
1840 Male, age 53, unknown 251.0
1831 Male, age 72, unknown 248.3
2464 Female, age 72, unknown 247.5
Periaquaductal grey, lateral
nTPM: 251.6
2140 Male, age 76, both hemispheres 253.3
2053 Male, age 18, unknown 252.5
2272 Male, age 74, both hemispheres 249.2
Pretectal area
nTPM: 250.4
2667 Female, age 75, unknown 255.1
2273 Male, age 74, both hemispheres 254.2
1817 Female, age 42, unknown 253.3
2224 Female, age 72, unknown 251.4
1944 Female, age 72, unknown 250.1
1815 Male, age 53, unknown 249.9
2007 Male, age 72, unknown 248.9
1816 Male, age 51, unknown 248.7
2407 Male, age 75, both hemispheres 248.5
2825 Male, age 18, unknown 247.8
2316 Male, age 76, right hemisphere 246.2
Red nucleus
nTPM: 251.7
1865 Male, age 51, unknown 257.2
1821 Female, age 72, unknown 254.7
1954 Female, age 42, unknown 253.8
2769 Male, age 72, unknown 253.7
1904 Male, age 53, unknown 252.6
2725 Female, age 75, unknown 252.4
2823 Male, age 76, right hemisphere 252.3
2503 Female, age 72, unknown 252.0
2227 Male, age 72, unknown 251.3
2785 Male, age 18, unknown 247.7
2584 Male, age 75, left hemisphere 246.6
2588 Male, age 74, left hemisphere 246.0
Substantia nigra
nTPM: 253.9
1916 Female, age 42, unknown 265.7
2699 Male, age 18, unknown 260.6
1851 Male, age 51, unknown 257.7
2409 Female, age 72, unknown 253.0
1889 Female, age 72, unknown 252.4
2665 Male, age 74, both hemispheres 252.1
1941 Male, age 53, unknown 251.4
2590 Female, age 75, unknown 251.3
2241 Male, age 72, unknown 248.4
2583 Male, age 75, right hemisphere 246.2
Superior colliculus
nTPM: 249.2
2587 Male, age 74, left hemisphere 256.0
1995 Male, age 72, unknown 251.3
1796 Male, age 53, unknown 251.2
1913 Female, age 42, unknown 250.1
1839 Male, age 51, unknown 248.2
2087 Female, age 72, unknown 248.0
2664 Male, age 75, both hemispheres 247.6
2261 Male, age 18, unknown 247.0
1895 Male, age 76, right hemisphere 246.5
2668 Female, age 75, unknown 246.1
Ventral tegmental area
nTPM: 253.3
1915 Female, age 42, unknown 258.1
2410 Female, age 72, unknown 256.1
2021 Male, age 53, unknown 253.0
2223 Female, age 72, unknown 252.3
2218 Male, age 76, both hemispheres 250.4
1942 Male, age 51, unknown 249.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.8
Samples: 139

Max nTPM: 110.0
Min nTPM: 26.6
Std nTPM: 14.1
Median nTPM: 55.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 110.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 90.6
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 89.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 88.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 87.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 87.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 83.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 83.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 79.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 79.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 78.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 213.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 213.5
FF:10158-103A5 76 years, female 213.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 91.2
Pig sample Sample description nTPM
Midbrain
nTPM: 88.5
Samples: 4

Max nTPM: 112.2
Min nTPM: 66.0
Sample A Female 112.2
Sample B Female 66.0
Sample C Male 102.5
Sample D Male 73.2
Periaqueductal gray
nTPM: 67.0
Samples: 3

Max nTPM: 81.6
Min nTPM: 56.9
Sample B Female 62.4
Sample C Male 81.6
Sample D Male 56.9
Substantia nigra
nTPM: 81.5
Samples: 4

Max nTPM: 121.6
Min nTPM: 50.1
Sample A Female 121.6
Sample B Female 72.9
Sample C Male 81.5
Sample D Male 50.1
Superior colliculi
nTPM: 91.2
Samples: 4

Max nTPM: 110.8
Min nTPM: 74.0
Sample A Female 110.8
Sample B Female 90.6
Sample C Male 89.2
Sample D Male 74.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 102.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 102.2
Samples: 4

Max nTPM: 111.8
Min nTPM: 93.6
Sample A Male 111.8
Sample B Male 100.4
Sample C Female 93.6
Sample D Female 103.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
1344 Antisense, RP_Baylor_102713, Mouse strain C57BL/6J (56 days, male) 0.8
1343 Antisense, RP_Baylor_102713, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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