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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.4 nTPM
HPA:56.4 nTPM
GTEx:52.8 nTPM
FANTOM5:120.8 Scaled Tags Per Million
Pig:42.4 nTPM
Mouse:71.3 nTPM
Allen mouse:3.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 56.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.0
1781 Male, age 74, unknown 45.3
2289 Male, age 61, right hemisphere 45.0
2290 Female, age 72, unknown 43.7
2846 Female, age 79, unknown 42.8
2288 Male, age 75, left hemisphere 39.8
1857 Female, age 85, left hemisphere 37.7
1854 Male, age 80, left hemisphere 36.0
2481 Female, age 94, left hemisphere 30.1
Claustrum
nTPM: 55.6
2568 Male, age 61, both hemispheres 69.9
2491 Male, age 75, both hemispheres 61.4
2645 Female, age 72, unknown 61.4
2284 Female, age 91, both hemispheres 61.0
2198 Male, age 80, both hemispheres 60.6
1956 Male, age 74, unknown 49.3
2392 Female, age 94, both hemispheres 48.2
2196 Female, age 79, unknown 45.0
2292 Female, age 85, both hemispheres 43.7
Globus pallidus, externus
nTPM: 28.5
2646 Male, age 61, right hemisphere 32.2
2772 Female, age 79, unknown 31.1
2395 Male, age 75, both hemispheres 28.0
2567 Female, age 72, unknown 27.8
1996 Male, age 80, right hemisphere 23.7
Globus pallidus, internus
nTPM: 28.7
2287 Male, age 75, right hemisphere 31.8
2483 Female, age 94, right hemisphere 31.7
1818 Male, age 74, unknown 31.4
2778 Female, age 91, both hemispheres 28.7
2111 Female, age 85, right hemisphere 26.8
2566 Female, age 72, unknown 26.8
2037 Male, age 80, right hemisphere 23.6
Nucleus accumbens
nTPM: 39.8
1783 Male, age 74, unknown 49.7
2824 Male, age 61, right hemisphere 47.4
1856 Female, age 91, right hemisphere 44.8
1806 Female, age 85, left hemisphere 39.9
2286 Male, age 75, left hemisphere 39.9
2698 Female, age 72, unknown 37.1
2732 Male, age 80, right hemisphere 30.0
2391 Female, age 94, left hemisphere 29.6
Nucleus basalis of Meynert
nTPM: 34.0
2484 Female, age 94, left hemisphere 40.3
2569 Male, age 61, both hemispheres 33.6
2821 Male, age 75, both hemispheres 31.1
2393 Male, age 80, right hemisphere 30.9
Nucleus of the diagonal band
nTPM: 54.8
2195 Female, age 85, both hemispheres 60.2
2775 Male, age 80, right hemisphere 59.9
2029 Male, age 61, right hemisphere 58.0
1812 Female, age 91, both hemispheres 51.1
1979 Male, age 74, unknown 44.8
Olfactory tubercle
nTPM: 56.4
2487 Female, age 94, left hemisphere 65.7
1998 Female, age 91, both hemispheres 58.8
1846 Male, age 80, right hemisphere 51.2
2856 Male, age 75, right hemisphere 50.1
Putamen
nTPM: 40.9
2647 Male, age 75, left hemisphere 46.1
2466 Female, age 79, unknown 45.0
2489 Female, age 72, unknown 41.6
1937 Female, age 91, right hemisphere 40.3
1838 Male, age 80, right hemisphere 40.2
1829 Male, age 74, unknown 39.0
2482 Female, age 94, left hemisphere 34.4
Septal nuclei
nTPM: 48.3
1960 Male, age 74, unknown 68.6
2031 Female, age 72, unknown 52.8
2629 Female, age 94, right hemisphere 51.7
2059 Female, age 85, both hemispheres 50.1
2009 Female, age 91, both hemispheres 46.7
2394 Male, age 61, left hemisphere 36.7
2199 Male, age 80, right hemisphere 31.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 52.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 45.3
Samples: 246

Max nTPM: 68.5
Min nTPM: 24.8
Std nTPM: 8.8
Median nTPM: 45.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 68.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 67.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 65.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 64.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 62.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 61.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 61.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 61.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 61.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 60.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 60.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 52.8
Samples: 246

Max nTPM: 87.4
Min nTPM: 16.5
Std nTPM: 11.2
Median nTPM: 53.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 87.4
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 82.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 81.7
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 80.7
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 75.7
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 73.6
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 72.3
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 71.5
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 71.3
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 69.7
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 69.1
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Brain - Putamen (basal ganglia)
Average nTPM: 46.3
Samples: 205

Max nTPM: 71.1
Min nTPM: 21.2
Std nTPM: 9.1
Median nTPM: 46.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 71.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 65.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 64.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 63.4
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 62.6
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 62.4
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 61.9
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 61.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 60.3
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 60.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 60.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 120.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 103.3
FF:10164-103B2 76 years, female 103.3
Globus pallidus
Scaled Tags Per Million: 76.7
FF:10175-103C4 60 years, female 83.6
FF:10161-103A8 76 years, female 69.9
Nucleus accumbens
Scaled Tags Per Million: 111.3
FF:10037-101F1 23-56 years, mixed 111.3
Putamen
Scaled Tags Per Million: 120.8
FF:10176-103C5 60 years, female 120.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 42.4
Pig sample Sample description nTPM
Caudate
nTPM: 40.5
Samples: 4

Max nTPM: 46.9
Min nTPM: 33.4
Sample A Female 33.4
Sample B Female 41.8
Sample C Male 46.9
Sample D Male 39.8
Putamen
nTPM: 42.4
Samples: 4

Max nTPM: 47.6
Min nTPM: 34.7
Sample A Female 40.4
Sample B Female 34.7
Sample C Male 47.0
Sample D Male 47.6
Septum
nTPM: 39.2
Samples: 4

Max nTPM: 45.9
Min nTPM: 33.8
Sample A Female 39.3
Sample B Female 37.7
Sample C Male 45.9
Sample D Male 33.8
Ventral pallidum
nTPM: 42.1
Samples: 4

Max nTPM: 54.5
Min nTPM: 34.1
Sample A Female 37.2
Sample B Female 34.1
Sample C Male 54.5
Sample D Male 42.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 71.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 59.6
Samples: 4

Max nTPM: 64.0
Min nTPM: 55.5
Sample A Male 55.5
Sample B Male 58.8
Sample C Female 60.2
Sample D Female 64.0
Septum
nTPM: 71.3
Samples: 4

Max nTPM: 78.6
Min nTPM: 66.9
Sample A Male 78.6
Sample B Male 66.9
Sample C Female 67.2
Sample D Female 72.5
Ventral forebrain
nTPM: 67.4
Samples: 4

Max nTPM: 70.0
Min nTPM: 65.8
Sample A Male 65.8
Sample B Male 66.9
Sample C Female 67.0
Sample D Female 70.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.1
72283569 Antisense, RP_051019_01_F06, Mouse strain C57BL/6J (56 days, male) 3.1
Pallidum
Expression energy: 2.4
72283569 Antisense, RP_051019_01_F06, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.