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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.5 nTPM
HPA:16.5 nTPM
GTEx:13.6 nTPM
FANTOM5:28.6 Scaled Tags Per Million
Pig:1.8 nTPM
Mouse:3.4 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 16.1
1781 Male, age 74, unknown 19.1
2481 Female, age 94, left hemisphere 18.9
2289 Male, age 61, right hemisphere 17.5
2290 Female, age 72, unknown 16.0
2846 Female, age 79, unknown 15.4
2288 Male, age 75, left hemisphere 14.7
1857 Female, age 85, left hemisphere 14.4
1854 Male, age 80, left hemisphere 12.9
Claustrum
nTPM: 15.9
2198 Male, age 80, both hemispheres 18.9
2284 Female, age 91, both hemispheres 18.1
2645 Female, age 72, unknown 17.0
2292 Female, age 85, both hemispheres 16.9
2491 Male, age 75, both hemispheres 16.7
1956 Male, age 74, unknown 15.1
2196 Female, age 79, unknown 14.9
2392 Female, age 94, both hemispheres 13.6
2568 Male, age 61, both hemispheres 12.3
Globus pallidus, externus
nTPM: 12.9
2395 Male, age 75, both hemispheres 13.8
2646 Male, age 61, right hemisphere 13.7
2772 Female, age 79, unknown 13.3
1996 Male, age 80, right hemisphere 12.4
2567 Female, age 72, unknown 11.4
Globus pallidus, internus
nTPM: 13.9
2483 Female, age 94, right hemisphere 19.1
2287 Male, age 75, right hemisphere 16.4
2778 Female, age 91, both hemispheres 13.2
2566 Female, age 72, unknown 12.5
2111 Female, age 85, right hemisphere 12.3
2037 Male, age 80, right hemisphere 12.1
1818 Male, age 74, unknown 11.6
Nucleus accumbens
nTPM: 15.2
1783 Male, age 74, unknown 17.5
2391 Female, age 94, left hemisphere 15.9
1806 Female, age 85, left hemisphere 15.6
2286 Male, age 75, left hemisphere 15.4
2824 Male, age 61, right hemisphere 15.1
2698 Female, age 72, unknown 14.3
1856 Female, age 91, right hemisphere 14.1
2732 Male, age 80, right hemisphere 14.0
Nucleus basalis of Meynert
nTPM: 14.7
2484 Female, age 94, left hemisphere 19.6
2821 Male, age 75, both hemispheres 13.9
2569 Male, age 61, both hemispheres 13.4
2393 Male, age 80, right hemisphere 11.8
Nucleus of the diagonal band
nTPM: 16.5
1812 Female, age 91, both hemispheres 17.9
1979 Male, age 74, unknown 17.8
2775 Male, age 80, right hemisphere 16.5
2195 Female, age 85, both hemispheres 16.4
2029 Male, age 61, right hemisphere 14.0
Olfactory tubercle
nTPM: 15.1
1998 Female, age 91, both hemispheres 17.6
2856 Male, age 75, right hemisphere 15.0
1846 Male, age 80, right hemisphere 14.4
2487 Female, age 94, left hemisphere 13.6
Putamen
nTPM: 14.6
2466 Female, age 79, unknown 17.3
2482 Female, age 94, left hemisphere 17.1
1937 Female, age 91, right hemisphere 15.1
1838 Male, age 80, right hemisphere 14.1
2647 Male, age 75, left hemisphere 13.7
2489 Female, age 72, unknown 12.6
1829 Male, age 74, unknown 12.4
Septal nuclei
nTPM: 15.4
1960 Male, age 74, unknown 19.3
2031 Female, age 72, unknown 17.7
2009 Female, age 91, both hemispheres 16.4
2059 Female, age 85, both hemispheres 15.8
2199 Male, age 80, right hemisphere 13.7
2629 Female, age 94, right hemisphere 12.5
2394 Male, age 61, left hemisphere 12.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.6
Samples: 246

Max nTPM: 59.8
Min nTPM: 3.9
Std nTPM: 6.5
Median nTPM: 10.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 59.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 57.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 37.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 35.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 32.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 28.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 26.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 25.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 25.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 24.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 23.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.6
Samples: 246

Max nTPM: 70.3
Min nTPM: 2.5
Std nTPM: 7.9
Median nTPM: 12.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 70.3
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 52.8
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 46.2
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 45.2
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 42.4
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 41.1
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 39.3
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 37.5
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 31.8
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 29.8
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 28.0
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Brain - Putamen (basal ganglia)
Average nTPM: 11.0
Samples: 205

Max nTPM: 47.2
Min nTPM: 2.8
Std nTPM: 5.3
Median nTPM: 9.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 47.2
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 33.5
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 29.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 27.1
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 26.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 24.0
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 24.0
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 23.9
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 21.5
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 20.2
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 19.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 28.6
FF:10164-103B2 76 years, female 28.6
Globus pallidus
Scaled Tags Per Million: 18.7
FF:10161-103A8 76 years, female 27.2
FF:10175-103C4 60 years, female 10.2
Nucleus accumbens
Scaled Tags Per Million: 20.7
FF:10037-101F1 23-56 years, mixed 20.7
Putamen
Scaled Tags Per Million: 25.5
FF:10176-103C5 60 years, female 25.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.8
Pig sample Sample description nTPM
Caudate
nTPM: 1.4
Samples: 4

Max nTPM: 1.6
Min nTPM: 1.0
Sample A Female 1.0
Sample B Female 1.6
Sample C Male 1.3
Sample D Male 1.5
Putamen
nTPM: 1.4
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.9
Sample A Female 0.9
Sample B Female 1.6
Sample C Male 1.3
Sample D Male 1.9
Septum
nTPM: 1.8
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.3
Sample A Female 1.3
Sample B Female 2.2
Sample C Male 1.6
Sample D Male 2.1
Ventral pallidum
nTPM: 1.5
Samples: 4

Max nTPM: 1.8
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 1.5
Sample C Male 1.8
Sample D Male 1.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.4
Samples: 4

Max nTPM: 4.5
Min nTPM: 2.4
Sample A Male 2.4
Sample B Male 4.5
Sample C Female 2.7
Sample D Female 3.9
Septum
nTPM: 3.2
Samples: 4

Max nTPM: 4.3
Min nTPM: 2.1
Sample A Male 4.3
Sample B Male 2.6
Sample C Female 3.6
Sample D Female 2.1
Ventral forebrain
nTPM: 3.1
Samples: 4

Max nTPM: 4.4
Min nTPM: 2.2
Sample A Male 4.4
Sample B Male 2.2
Sample C Female 3.4
Sample D Female 2.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
68162246 Antisense, RP_041122_02_E01, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
68162246 Antisense, RP_041122_02_E01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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