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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:19.7 nTPM
HPA:19.7 nTPM
GTEx:13.6 nTPM
FANTOM5:148.4 Scaled Tags Per Million
Pig:47.6 nTPM
Mouse:55.5 nTPM
Allen mouse:2.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA045245Antibody HPA048161
Glial cells HighLow
Neuronal cells HighLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 19.7
Sample id Sample description nTPM
Hippocampus
nTPM: 13.3
2621 Female, age 67, right hemisphere 15.8
2148 Female, age 91, left hemisphere 14.6
1911 Female, age 85, right hemisphere 14.3
2529 Female, age 94, left hemisphere 14.2
1898 Male, age 80, left hemisphere 12.8
1855 Male, age 76, left hemisphere 7.8
Dentate gyrus
nTPM: 12.9
2528 Male, age 74, both hemispheres 14.8
2010 Male, age 76, both hemispheres 14.5
2531 Female, age 67, both hemispheres 12.9
2530 Female, age 94, left hemisphere 12.4
1927 Female, age 91, both hemispheres 11.9
2246 Female, age 85, both hemispheres 11.1
Entorhinal gyrus
nTPM: 16.5
2117 Female, age 91, right hemisphere 27.3
2764 Male, age 80, right hemisphere 24.8
2613 Female, age 94, left hemisphere 21.4
2686 Male, age 75, right hemisphere 9.6
1938 Female, age 85, left hemisphere 9.1
1787 Male, age 76, left hemisphere 6.8
Hippocampus, CA1
nTPM: 13.3
2082 Female, age 91, right hemisphere 15.0
2527 Male, age 74, both hemispheres 15.0
2045 Male, age 76, both hemispheres 12.8
1873 Female, age 85, both hemispheres 12.6
2749 Male, age 80, left hemisphere 11.1
Hippocampus, CA2
nTPM: 13.4
2249 Male, age 74, both hemispheres 18.9
1963 Male, age 80, left hemisphere 16.3
2113 Female, age 91, right hemisphere 14.3
1892 Male, age 76, both hemispheres 13.7
2437 Female, age 94, left hemisphere 10.3
1940 Female, age 85, left hemisphere 7.1
Hippocampus, CA3
nTPM: 16.0
2620 Female, age 94, left hemisphere 32.3
1891 Female, age 85, both hemispheres 23.3
1867 Male, age 76, both hemispheres 18.8
2137 Male, age 80, left hemisphere 10.8
2436 Male, age 74, both hemispheres 6.0
2861 Female, age 67, both hemispheres 5.1
Parahippocampal cortex
nTPM: 12.1
2692 Male, age 74, both hemispheres 24.1
1990 Female, age 91, right hemisphere 20.0
2532 Female, age 72, left hemisphere 14.3
2693 Female, age 94, both hemispheres 11.8
1850 Male, age 80, both hemispheres 11.1
2245 Female, age 91, both hemispheres 10.5
1933 Female, age 85, both hemispheres 10.4
2018 Male, age 76, both hemispheres 10.2
2622 Female, age 67, right hemisphere 5.5
2250 Female, age 67, right hemisphere 3.2
Perirhinal gyrus
nTPM: 8.0
2521 Female, age 94, right hemisphere 13.6
1794 Male, age 80, right hemisphere 10.2
1847 Female, age 91, left hemisphere 10.0
2848 Male, age 76, right hemisphere 3.2
1841 Female, age 85, right hemisphere 3.1
Subiculum
nTPM: 19.7
1901 Male, age 80, both hemispheres 26.4
2619 Male, age 74, both hemispheres 24.6
1977 Female, age 85, both hemispheres 21.0
2042 Male, age 76, both hemispheres 16.6
2729 Female, age 91, right hemisphere 15.6
2438 Female, age 94, left hemisphere 13.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.6
Samples: 197

Max nTPM: 49.1
Min nTPM: 3.4
Std nTPM: 6.6
Median nTPM: 12.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 49.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 42.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 32.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 32.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 29.5
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 28.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 27.8
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 25.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 25.3
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 25.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 25.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 148.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 148.4
FF:10153-102I9 76 years, female 179.7
FF:10169-103B7 60 years, female 117.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 47.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 47.7
Samples: 4

Max nTPM: 59.4
Min nTPM: 32.8
Sample A Female 59.4
Sample B Female 46.8
Sample C Male 51.6
Sample D Male 32.8
Entorhinal cortex
nTPM: 33.6
Samples: 4

Max nTPM: 36.4
Min nTPM: 29.7
Sample A Female 34.7
Sample B Female 36.4
Sample C Male 29.7
Sample D Male 33.5
Subiculum
nTPM: 31.2
Samples: 4

Max nTPM: 35.4
Min nTPM: 27.6
Sample A Female 35.4
Sample B Female 31.3
Sample C Male 30.5
Sample D Male 27.6
Ventral hippocampus
nTPM: 41.6
Samples: 4

Max nTPM: 48.8
Min nTPM: 28.8
Sample A Female 41.2
Sample B Female 28.8
Sample C Male 47.7
Sample D Male 48.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 55.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 47.2
Samples: 4

Max nTPM: 51.3
Min nTPM: 44.4
Sample A Male 47.4
Sample B Male 44.4
Sample C Female 45.5
Sample D Female 51.3
Hippocampal formation
nTPM: 55.6
Samples: 4

Max nTPM: 63.4
Min nTPM: 47.5
Sample A Male 47.5
Sample B Male 56.0
Sample C Female 63.4
Sample D Female 55.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.7
69529059 Antisense, RP_050421_03_D07, Mouse strain C57BL/6J (56 days, male) 3.7
74881867 Antisense, RP_060315_04_D06, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.