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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.2 nTPM
HPA:29.2 nTPM
GTEx:43.6 nTPM
FANTOM5:131.9 Scaled Tags Per Million
Pig:24.7 nTPM
Mouse:25.6 nTPM
Allen mouse:4.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.0
2586 Male, age 75, left hemisphere 30.0
1827 Male, age 72, unknown 29.0
1830 Male, age 51, unknown 27.2
2666 Male, age 74, left hemisphere 27.1
2219 Male, age 76, both hemispheres 27.0
2828 Female, age 72, unknown 26.7
1833 Male, age 53, unknown 24.3
2411 Female, age 72, unknown 24.2
1870 Female, age 42, unknown 23.3
2019 Male, age 18, unknown 21.5
Dorsal raphe nucleus
nTPM: 23.0
2750 Male, age 76, both hemispheres 25.0
2016 Female, age 72, unknown 24.0
2047 Male, age 72, unknown 23.0
2298 Female, age 72, unknown 22.0
1828 Male, age 53, unknown 20.9
Inferior colliculus
nTPM: 23.1
2849 Male, age 72, unknown 27.3
1848 Female, age 42, unknown 24.0
1890 Male, age 53, unknown 21.3
2097 Female, age 72, unknown 20.0
Median raphe nucleus
nTPM: 24.3
2220 Male, age 76, midline 24.3
Pedunculopontine tegmental nucleus
nTPM: 24.8
2334 Male, age 80, both hemispheres 25.0
1921 Female, age 85, both hemispheres 24.9
2338 Male, age 61, both hemispheres 24.4
Periaquaductal grey, anterior
nTPM: 26.2
1947 Male, age 18, unknown 27.7
1795 Male, age 51, unknown 25.9
2502 Female, age 75, unknown 25.0
Periaquaductal grey, dorsal
nTPM: 23.4
2850 Male, age 76, both hemispheres 24.7
1831 Male, age 72, unknown 24.1
1840 Male, age 53, unknown 23.5
2464 Female, age 72, unknown 21.4
Periaquaductal grey, lateral
nTPM: 25.3
2272 Male, age 74, both hemispheres 30.1
2140 Male, age 76, both hemispheres 23.3
2053 Male, age 18, unknown 22.6
Pretectal area
nTPM: 25.0
2007 Male, age 72, unknown 29.2
2407 Male, age 75, both hemispheres 26.4
1815 Male, age 53, unknown 26.2
2825 Male, age 18, unknown 26.2
1816 Male, age 51, unknown 26.1
1944 Female, age 72, unknown 25.2
2273 Male, age 74, both hemispheres 24.2
1817 Female, age 42, unknown 23.8
2224 Female, age 72, unknown 23.7
2316 Male, age 76, right hemisphere 23.5
2667 Female, age 75, unknown 20.7
Red nucleus
nTPM: 29.2
2588 Male, age 74, left hemisphere 35.0
2725 Female, age 75, unknown 33.7
2503 Female, age 72, unknown 32.3
2785 Male, age 18, unknown 30.1
1954 Female, age 42, unknown 29.6
2584 Male, age 75, left hemisphere 29.4
1865 Male, age 51, unknown 28.2
1904 Male, age 53, unknown 28.1
2227 Male, age 72, unknown 28.0
2769 Male, age 72, unknown 27.6
2823 Male, age 76, right hemisphere 25.0
1821 Female, age 72, unknown 23.2
Substantia nigra
nTPM: 21.5
2699 Male, age 18, unknown 26.1
1889 Female, age 72, unknown 24.1
1916 Female, age 42, unknown 23.5
1941 Male, age 53, unknown 23.4
2583 Male, age 75, right hemisphere 22.7
2665 Male, age 74, both hemispheres 22.5
1851 Male, age 51, unknown 21.3
2590 Female, age 75, unknown 21.3
2409 Female, age 72, unknown 17.2
2241 Male, age 72, unknown 13.3
Superior colliculus
nTPM: 26.3
1913 Female, age 42, unknown 28.9
1796 Male, age 53, unknown 28.2
2668 Female, age 75, unknown 28.2
1995 Male, age 72, unknown 27.6
1839 Male, age 51, unknown 26.1
1895 Male, age 76, right hemisphere 25.8
2087 Female, age 72, unknown 24.8
2261 Male, age 18, unknown 24.8
2587 Male, age 74, left hemisphere 24.4
2664 Male, age 75, both hemispheres 24.4
Ventral tegmental area
nTPM: 22.6
2218 Male, age 76, both hemispheres 26.3
2223 Female, age 72, unknown 23.6
2021 Male, age 53, unknown 23.5
1942 Male, age 51, unknown 21.5
1915 Female, age 42, unknown 21.3
2410 Female, age 72, unknown 19.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.6
Samples: 139

Max nTPM: 78.8
Min nTPM: 24.7
Std nTPM: 9.3
Median nTPM: 43.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 78.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 70.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 66.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 66.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 65.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 64.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 64.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 64.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 63.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 63.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 62.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 131.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 131.9
FF:10158-103A5 76 years, female 131.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.7
Pig sample Sample description nTPM
Midbrain
nTPM: 24.7
Samples: 4

Max nTPM: 29.0
Min nTPM: 22.0
Sample A Female 29.0
Sample B Female 22.0
Sample C Male 23.7
Sample D Male 24.0
Periaqueductal gray
nTPM: 24.1
Samples: 3

Max nTPM: 25.4
Min nTPM: 23.4
Sample B Female 23.4
Sample C Male 25.4
Sample D Male 23.5
Substantia nigra
nTPM: 23.6
Samples: 4

Max nTPM: 27.6
Min nTPM: 20.3
Sample A Female 20.3
Sample B Female 21.1
Sample C Male 25.4
Sample D Male 27.6
Superior colliculi
nTPM: 23.6
Samples: 4

Max nTPM: 26.1
Min nTPM: 21.0
Sample A Female 22.1
Sample B Female 21.0
Sample C Male 25.1
Sample D Male 26.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.6
Samples: 4

Max nTPM: 26.3
Min nTPM: 24.8
Sample A Male 25.1
Sample B Male 24.8
Sample C Female 26.0
Sample D Female 26.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
69816482 Antisense, RP_050510_01_B10, Mouse strain C57BL/6J (56 days, male) 4.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.