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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:49.9 nTPM
HPA:49.9 nTPM
GTEx:59.0 nTPM
FANTOM5:51.3 Scaled Tags Per Million
Pig:27.7 nTPM
Mouse:131.5 nTPM
Allen mouse:8.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA028200
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 49.9
Sample id Sample description nTPM
Hippocampus
nTPM: 46.8
1898 Male, age 80, left hemisphere 50.8
2529 Female, age 94, left hemisphere 48.6
2621 Female, age 67, right hemisphere 48.6
2148 Female, age 91, left hemisphere 45.0
1855 Male, age 76, left hemisphere 44.2
1911 Female, age 85, right hemisphere 43.3
Dentate gyrus
nTPM: 48.8
2530 Female, age 94, left hemisphere 54.7
2010 Male, age 76, both hemispheres 50.3
1927 Female, age 91, both hemispheres 48.8
2528 Male, age 74, both hemispheres 47.9
2246 Female, age 85, both hemispheres 47.1
2531 Female, age 67, both hemispheres 44.2
Entorhinal gyrus
nTPM: 44.9
2764 Male, age 80, right hemisphere 49.2
1938 Female, age 85, left hemisphere 47.6
1787 Male, age 76, left hemisphere 46.0
2117 Female, age 91, right hemisphere 45.5
2613 Female, age 94, left hemisphere 40.8
2686 Male, age 75, right hemisphere 40.5
Hippocampus, CA1
nTPM: 48.0
2749 Male, age 80, left hemisphere 59.5
1873 Female, age 85, both hemispheres 49.1
2527 Male, age 74, both hemispheres 45.5
2045 Male, age 76, both hemispheres 44.2
2082 Female, age 91, right hemisphere 41.5
Hippocampus, CA2
nTPM: 48.2
1963 Male, age 80, left hemisphere 55.2
1892 Male, age 76, both hemispheres 51.1
2249 Male, age 74, both hemispheres 49.0
2437 Female, age 94, left hemisphere 47.6
1940 Female, age 85, left hemisphere 44.1
2113 Female, age 91, right hemisphere 42.1
Hippocampus, CA3
nTPM: 45.7
2436 Male, age 74, both hemispheres 47.6
1867 Male, age 76, both hemispheres 45.8
2137 Male, age 80, left hemisphere 45.7
2861 Female, age 67, both hemispheres 45.7
1891 Female, age 85, both hemispheres 44.9
2620 Female, age 94, left hemisphere 44.6
Parahippocampal cortex
nTPM: 45.5
1850 Male, age 80, both hemispheres 49.9
1933 Female, age 85, both hemispheres 48.3
2250 Female, age 67, right hemisphere 47.7
2532 Female, age 72, left hemisphere 46.8
2245 Female, age 91, both hemispheres 46.6
1990 Female, age 91, right hemisphere 46.3
2693 Female, age 94, both hemispheres 44.4
2622 Female, age 67, right hemisphere 41.9
2018 Male, age 76, both hemispheres 41.7
2692 Male, age 74, both hemispheres 41.1
Perirhinal gyrus
nTPM: 49.9
1794 Male, age 80, right hemisphere 52.2
1847 Female, age 91, left hemisphere 50.6
2848 Male, age 76, right hemisphere 49.2
2521 Female, age 94, right hemisphere 48.9
1841 Female, age 85, right hemisphere 48.5
Subiculum
nTPM: 43.6
1977 Female, age 85, both hemispheres 49.6
2438 Female, age 94, left hemisphere 43.7
1901 Male, age 80, both hemispheres 43.3
2619 Male, age 74, both hemispheres 42.8
2729 Female, age 91, right hemisphere 42.2
2042 Male, age 76, both hemispheres 39.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 59.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 59.0
Samples: 197

Max nTPM: 127.5
Min nTPM: 25.1
Std nTPM: 16.3
Median nTPM: 56.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 127.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 106.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 104.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 100.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 99.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 97.1
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 95.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 91.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 90.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 90.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 89.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 51.3
FF:10169-103B7 60 years, female 59.6
FF:10153-102I9 76 years, female 43.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 27.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 25.4
Samples: 4

Max nTPM: 37.0
Min nTPM: 16.5
Sample A Female 37.0
Sample B Female 25.8
Sample C Male 16.5
Sample D Male 22.4
Entorhinal cortex
nTPM: 16.0
Samples: 4

Max nTPM: 19.3
Min nTPM: 12.0
Sample A Female 15.2
Sample B Female 19.3
Sample C Male 17.5
Sample D Male 12.0
Subiculum
nTPM: 21.1
Samples: 4

Max nTPM: 23.8
Min nTPM: 18.7
Sample A Female 23.8
Sample B Female 21.6
Sample C Male 18.7
Sample D Male 20.2
Ventral hippocampus
nTPM: 27.8
Samples: 4

Max nTPM: 32.4
Min nTPM: 20.7
Sample A Female 29.6
Sample B Female 20.7
Sample C Male 32.4
Sample D Male 28.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 131.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 131.1
Samples: 4

Max nTPM: 144.2
Min nTPM: 124.2
Sample A Male 124.2
Sample B Male 127.9
Sample C Female 128.2
Sample D Female 144.2
Hippocampal formation
nTPM: 131.5
Samples: 4

Max nTPM: 142.9
Min nTPM: 115.9
Sample A Male 142.9
Sample B Male 115.9
Sample C Female 136.4
Sample D Female 130.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.6
76085745 Antisense, RP_060530_01_F05, Mouse strain C57BL/6J (56 days, male) 11.7
69113674 Antisense, RP_050316_02_E08, Mouse strain C57BL/6J (56 days, male) 5.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.