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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.0 nTPM
HPA:20.0 nTPM
GTEx:36.2 nTPM
FANTOM5:8.6 Scaled Tags Per Million
Mouse:6.0 nTPM
Allen mouse:0.4 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 20.0
Sample id Sample description nTPM
Hippocampus
nTPM: 18.9
2529 Female, age 94, left hemisphere 21.7
1855 Male, age 76, left hemisphere 21.0
2621 Female, age 67, right hemisphere 19.2
1898 Male, age 80, left hemisphere 17.6
2148 Female, age 91, left hemisphere 17.3
1911 Female, age 85, right hemisphere 16.9
Dentate gyrus
nTPM: 19.2
2530 Female, age 94, left hemisphere 25.1
2010 Male, age 76, both hemispheres 20.8
2531 Female, age 67, both hemispheres 20.1
2246 Female, age 85, both hemispheres 16.6
2528 Male, age 74, both hemispheres 16.6
1927 Female, age 91, both hemispheres 15.7
Entorhinal gyrus
nTPM: 20.0
1787 Male, age 76, left hemisphere 23.9
2686 Male, age 75, right hemisphere 21.9
2117 Female, age 91, right hemisphere 19.7
2764 Male, age 80, right hemisphere 19.5
2613 Female, age 94, left hemisphere 19.0
1938 Female, age 85, left hemisphere 15.9
Hippocampus, CA1
nTPM: 17.4
2045 Male, age 76, both hemispheres 19.9
2082 Female, age 91, right hemisphere 18.3
2527 Male, age 74, both hemispheres 16.9
2749 Male, age 80, left hemisphere 16.1
1873 Female, age 85, both hemispheres 16.0
Hippocampus, CA2
nTPM: 19.0
1963 Male, age 80, left hemisphere 20.6
2437 Female, age 94, left hemisphere 20.1
1940 Female, age 85, left hemisphere 18.9
1892 Male, age 76, both hemispheres 18.8
2249 Male, age 74, both hemispheres 17.9
2113 Female, age 91, right hemisphere 17.7
Hippocampus, CA3
nTPM: 18.4
2861 Female, age 67, both hemispheres 26.3
1867 Male, age 76, both hemispheres 18.6
2137 Male, age 80, left hemisphere 17.7
2436 Male, age 74, both hemispheres 16.3
2620 Female, age 94, left hemisphere 16.0
1891 Female, age 85, both hemispheres 15.6
Parahippocampal cortex
nTPM: 18.5
2622 Female, age 67, right hemisphere 22.5
2532 Female, age 72, left hemisphere 20.5
1990 Female, age 91, right hemisphere 19.7
2245 Female, age 91, both hemispheres 19.7
2018 Male, age 76, both hemispheres 19.2
2250 Female, age 67, right hemisphere 18.5
2692 Male, age 74, both hemispheres 17.9
1933 Female, age 85, both hemispheres 16.0
1850 Male, age 80, both hemispheres 15.4
2693 Female, age 94, both hemispheres 15.3
Perirhinal gyrus
nTPM: 17.3
2848 Male, age 76, right hemisphere 21.0
1794 Male, age 80, right hemisphere 17.4
2521 Female, age 94, right hemisphere 16.8
1847 Female, age 91, left hemisphere 15.8
1841 Female, age 85, right hemisphere 15.3
Subiculum
nTPM: 18.6
2042 Male, age 76, both hemispheres 20.3
2438 Female, age 94, left hemisphere 18.8
2729 Female, age 91, right hemisphere 18.8
2619 Male, age 74, both hemispheres 18.6
1901 Male, age 80, both hemispheres 18.0
1977 Female, age 85, both hemispheres 17.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 36.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 36.2
Samples: 197

Max nTPM: 173.0
Min nTPM: 9.6
Std nTPM: 23.6
Median nTPM: 28.2
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 173.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 142.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 127.1
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 119.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 116.5
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 89.3
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 86.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 78.6
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 76.3
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 75.5
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 72.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 8.6
FF:10153-102I9 76 years, female 12.1
FF:10169-103B7 60 years, female 5.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 6.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 6.0
Samples: 4

Max nTPM: 9.4
Min nTPM: 3.4
Sample A Male 7.5
Sample B Male 9.4
Sample C Female 3.8
Sample D Female 3.4
Hippocampal formation
nTPM: 3.5
Samples: 4

Max nTPM: 4.5
Min nTPM: 2.6
Sample A Male 3.4
Sample B Male 3.4
Sample C Female 2.6
Sample D Female 4.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
71836849 Antisense, RP_051017_02_C12, Mouse strain C57BL/6J (56 days, male) 0.8
68191408 Antisense, RP_041129_01_B04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.