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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.3 nTPM
HPA:20.3 nTPM
GTEx:35.1 nTPM
FANTOM5:12.8 Scaled Tags Per Million
Mouse:3.9 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 20.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.2
1781 Male, age 74, unknown 30.4
2290 Female, age 72, unknown 19.0
2289 Male, age 61, right hemisphere 18.6
2846 Female, age 79, unknown 18.5
2481 Female, age 94, left hemisphere 18.3
2288 Male, age 75, left hemisphere 17.7
1854 Male, age 80, left hemisphere 16.4
1857 Female, age 85, left hemisphere 14.8
Claustrum
nTPM: 18.9
2292 Female, age 85, both hemispheres 23.3
2645 Female, age 72, unknown 23.3
2284 Female, age 91, both hemispheres 20.2
2198 Male, age 80, both hemispheres 20.1
2491 Male, age 75, both hemispheres 18.6
1956 Male, age 74, unknown 16.9
2568 Male, age 61, both hemispheres 16.4
2196 Female, age 79, unknown 16.3
2392 Female, age 94, both hemispheres 15.1
Globus pallidus, externus
nTPM: 20.3
2567 Female, age 72, unknown 22.8
1996 Male, age 80, right hemisphere 20.5
2772 Female, age 79, unknown 20.5
2646 Male, age 61, right hemisphere 20.3
2395 Male, age 75, both hemispheres 17.2
Globus pallidus, internus
nTPM: 19.5
2111 Female, age 85, right hemisphere 21.4
2483 Female, age 94, right hemisphere 19.6
2037 Male, age 80, right hemisphere 19.4
2566 Female, age 72, unknown 19.3
2778 Female, age 91, both hemispheres 19.3
1818 Male, age 74, unknown 19.0
2287 Male, age 75, right hemisphere 18.5
Nucleus accumbens
nTPM: 16.2
2732 Male, age 80, right hemisphere 20.7
1783 Male, age 74, unknown 17.9
1806 Female, age 85, left hemisphere 16.9
2286 Male, age 75, left hemisphere 15.8
2698 Female, age 72, unknown 15.6
2391 Female, age 94, left hemisphere 15.4
1856 Female, age 91, right hemisphere 14.1
2824 Male, age 61, right hemisphere 13.2
Nucleus basalis of Meynert
nTPM: 18.8
2484 Female, age 94, left hemisphere 20.8
2569 Male, age 61, both hemispheres 20.7
2821 Male, age 75, both hemispheres 18.3
2393 Male, age 80, right hemisphere 15.6
Nucleus of the diagonal band
nTPM: 17.6
1812 Female, age 91, both hemispheres 21.1
1979 Male, age 74, unknown 18.2
2029 Male, age 61, right hemisphere 16.2
2775 Male, age 80, right hemisphere 16.2
2195 Female, age 85, both hemispheres 16.1
Olfactory tubercle
nTPM: 17.1
2856 Male, age 75, right hemisphere 18.5
1998 Female, age 91, both hemispheres 17.4
1846 Male, age 80, right hemisphere 16.4
2487 Female, age 94, left hemisphere 16.1
Putamen
nTPM: 17.5
2489 Female, age 72, unknown 20.3
2647 Male, age 75, left hemisphere 20.1
2466 Female, age 79, unknown 18.1
2482 Female, age 94, left hemisphere 16.9
1838 Male, age 80, right hemisphere 16.1
1829 Male, age 74, unknown 15.6
1937 Female, age 91, right hemisphere 15.4
Septal nuclei
nTPM: 17.5
2199 Male, age 80, right hemisphere 19.4
2009 Female, age 91, both hemispheres 18.1
2059 Female, age 85, both hemispheres 18.1
2031 Female, age 72, unknown 17.6
2394 Male, age 61, left hemisphere 17.6
1960 Male, age 74, unknown 16.0
2629 Female, age 94, right hemisphere 16.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 35.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.7
Samples: 246

Max nTPM: 287.7
Min nTPM: 9.1
Std nTPM: 24.3
Median nTPM: 26.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 287.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 154.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 100.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 92.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 84.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 84.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 79.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 76.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 73.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 71.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 70.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.8
Samples: 246

Max nTPM: 206.6
Min nTPM: 7.7
Std nTPM: 18.1
Median nTPM: 25.5
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 206.6
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 121.2
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 77.4
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 76.1
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 71.6
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 71.4
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 71.1
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 70.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 61.0
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 59.1
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 56.8
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Brain - Putamen (basal ganglia)
Average nTPM: 35.1
Samples: 205

Max nTPM: 201.9
Min nTPM: 9.0
Std nTPM: 22.2
Median nTPM: 29.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 201.9
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 136.8
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 123.7
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 98.9
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 81.7
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 80.6
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 71.6
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 71.4
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 70.7
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 70.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 67.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 9.1
FF:10164-103B2 76 years, female 9.1
Globus pallidus
Scaled Tags Per Million: 8.2
FF:10161-103A8 76 years, female 9.3
FF:10175-103C4 60 years, female 7.1
Nucleus accumbens
Scaled Tags Per Million: 7.5
FF:10037-101F1 23-56 years, mixed 7.5
Putamen
Scaled Tags Per Million: 12.8
FF:10176-103C5 60 years, female 12.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.1
Samples: 4

Max nTPM: 3.0
Min nTPM: 1.5
Sample A Male 3.0
Sample B Male 2.2
Sample C Female 1.5
Sample D Female 1.5
Septum
nTPM: 3.9
Samples: 4

Max nTPM: 4.6
Min nTPM: 3.2
Sample A Male 4.6
Sample B Male 3.9
Sample C Female 3.8
Sample D Female 3.2
Ventral forebrain
nTPM: 3.2
Samples: 4

Max nTPM: 4.0
Min nTPM: 2.2
Sample A Male 4.0
Sample B Male 2.2
Sample C Female 2.8
Sample D Female 3.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
71836849 Antisense, RP_051017_02_C12, Mouse strain C57BL/6J (56 days, male) 0.5
68191408 Antisense, RP_041129_01_B04, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.2
71836849 Antisense, RP_051017_02_C12, Mouse strain C57BL/6J (56 days, male) 0.5
68191408 Antisense, RP_041129_01_B04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.