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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:24.4 nTPM
HPA:24.4 nTPM
GTEx:17.7 nTPM
FANTOM5:9.6 Scaled Tags Per Million
Pig:31.1 nTPM
Mouse:111.6 nTPM
Allen mouse:5.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA065937
Glial cells Not detected
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 24.4
Sample id Sample description nTPM
Hippocampus
nTPM: 20.1
2148 Female, age 91, left hemisphere 30.5
1855 Male, age 76, left hemisphere 29.5
2621 Female, age 67, right hemisphere 20.3
1898 Male, age 80, left hemisphere 20.1
2529 Female, age 94, left hemisphere 10.2
1911 Female, age 85, right hemisphere 9.9
Dentate gyrus
nTPM: 22.3
1927 Female, age 91, both hemispheres 32.7
2010 Male, age 76, both hemispheres 30.5
2531 Female, age 67, both hemispheres 22.5
2246 Female, age 85, both hemispheres 17.0
2530 Female, age 94, left hemisphere 15.8
2528 Male, age 74, both hemispheres 15.0
Entorhinal gyrus
nTPM: 11.7
1938 Female, age 85, left hemisphere 14.9
2764 Male, age 80, right hemisphere 14.5
2613 Female, age 94, left hemisphere 13.1
2686 Male, age 75, right hemisphere 11.4
1787 Male, age 76, left hemisphere 9.8
2117 Female, age 91, right hemisphere 6.2
Hippocampus, CA1
nTPM: 24.4
2045 Male, age 76, both hemispheres 41.7
2749 Male, age 80, left hemisphere 30.5
1873 Female, age 85, both hemispheres 19.4
2082 Female, age 91, right hemisphere 17.9
2527 Male, age 74, both hemispheres 12.3
Hippocampus, CA2
nTPM: 17.0
1963 Male, age 80, left hemisphere 31.7
1892 Male, age 76, both hemispheres 22.3
1940 Female, age 85, left hemisphere 13.5
2113 Female, age 91, right hemisphere 13.4
2249 Male, age 74, both hemispheres 11.0
2437 Female, age 94, left hemisphere 10.4
Hippocampus, CA3
nTPM: 24.1
2620 Female, age 94, left hemisphere 36.2
2861 Female, age 67, both hemispheres 31.2
1867 Male, age 76, both hemispheres 23.6
2137 Male, age 80, left hemisphere 21.5
2436 Male, age 74, both hemispheres 21.4
1891 Female, age 85, both hemispheres 10.6
Parahippocampal cortex
nTPM: 12.5
2018 Male, age 76, both hemispheres 18.6
2245 Female, age 91, both hemispheres 16.3
1933 Female, age 85, both hemispheres 15.5
2622 Female, age 67, right hemisphere 13.8
2250 Female, age 67, right hemisphere 12.3
1850 Male, age 80, both hemispheres 12.0
2693 Female, age 94, both hemispheres 9.9
1990 Female, age 91, right hemisphere 9.0
2532 Female, age 72, left hemisphere 8.9
2692 Male, age 74, both hemispheres 8.9
Perirhinal gyrus
nTPM: 15.2
2521 Female, age 94, right hemisphere 24.4
1847 Female, age 91, left hemisphere 20.5
1794 Male, age 80, right hemisphere 16.3
1841 Female, age 85, right hemisphere 8.8
2848 Male, age 76, right hemisphere 5.9
Subiculum
nTPM: 11.3
2729 Female, age 91, right hemisphere 17.7
1901 Male, age 80, both hemispheres 12.7
2042 Male, age 76, both hemispheres 11.8
1977 Female, age 85, both hemispheres 10.3
2619 Male, age 74, both hemispheres 9.3
2438 Female, age 94, left hemisphere 6.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 17.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 17.7
Samples: 197

Max nTPM: 51.9
Min nTPM: 4.0
Std nTPM: 8.6
Median nTPM: 16.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 51.9
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 49.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 45.4
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 41.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 39.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 39.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 39.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 34.2
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 33.7
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 33.1
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 32.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 9.6
FF:10153-102I9 76 years, female 10.9
FF:10169-103B7 60 years, female 8.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 31.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 30.7
Samples: 4

Max nTPM: 38.2
Min nTPM: 21.3
Sample A Female 38.2
Sample B Female 37.3
Sample C Male 21.3
Sample D Male 25.9
Entorhinal cortex
nTPM: 31.1
Samples: 4

Max nTPM: 34.2
Min nTPM: 26.0
Sample A Female 30.7
Sample B Female 34.2
Sample C Male 33.6
Sample D Male 26.0
Subiculum
nTPM: 21.0
Samples: 4

Max nTPM: 25.9
Min nTPM: 17.6
Sample A Female 25.9
Sample B Female 20.0
Sample C Male 20.4
Sample D Male 17.6
Ventral hippocampus
nTPM: 25.0
Samples: 4

Max nTPM: 35.4
Min nTPM: 17.7
Sample A Female 19.6
Sample B Female 17.7
Sample C Male 27.1
Sample D Male 35.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 111.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 43.0
Samples: 4

Max nTPM: 52.1
Min nTPM: 33.2
Sample A Male 41.9
Sample B Male 33.2
Sample C Female 52.1
Sample D Female 44.7
Hippocampal formation
nTPM: 111.6
Samples: 4

Max nTPM: 149.2
Min nTPM: 84.4
Sample A Male 84.4
Sample B Male 118.1
Sample C Female 149.2
Sample D Female 94.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.8
73925718 Antisense, RP_051214_03_B05, Mouse strain C57BL/6J (56 days, male) 5.8
69448966 Antisense, RP_050419_03_A04, Mouse strain C57BL/6J (56 days, male) 5.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.