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COX7A1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:188.7 nTPM
HPA:188.7 nTPM
GTEx:44.1 nTPM
FANTOM5:19.6 Scaled Tags Per Million
Pig:28.1 nTPM
Mouse:15.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 188.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 181.3
2019 Male, age 18, unknown 196.6
1827 Male, age 72, unknown 184.6
2666 Male, age 74, left hemisphere 183.2
1870 Female, age 42, unknown 181.5
2586 Male, age 75, left hemisphere 180.2
2828 Female, age 72, unknown 179.9
2411 Female, age 72, unknown 178.7
1830 Male, age 51, unknown 177.8
2219 Male, age 76, both hemispheres 176.1
1833 Male, age 53, unknown 174.3
Dorsal raphe nucleus
nTPM: 188.7
1828 Male, age 53, unknown 198.9
2047 Male, age 72, unknown 194.6
2298 Female, age 72, unknown 185.6
2016 Female, age 72, unknown 185.4
2750 Male, age 76, both hemispheres 179.1
Inferior colliculus
nTPM: 184.0
1890 Male, age 53, unknown 189.6
2097 Female, age 72, unknown 189.4
1848 Female, age 42, unknown 183.1
2849 Male, age 72, unknown 174.0
Median raphe nucleus
nTPM: 181.4
2220 Male, age 76, midline 181.4
Pedunculopontine tegmental nucleus
nTPM: 185.1
2334 Male, age 80, both hemispheres 190.7
2338 Male, age 61, both hemispheres 183.2
1921 Female, age 85, both hemispheres 181.4
Periaquaductal grey, anterior
nTPM: 179.0
1795 Male, age 51, unknown 181.3
2502 Female, age 75, unknown 178.9
1947 Male, age 18, unknown 176.9
Periaquaductal grey, dorsal
nTPM: 177.0
1831 Male, age 72, unknown 182.7
2464 Female, age 72, unknown 177.2
2850 Male, age 76, both hemispheres 175.2
1840 Male, age 53, unknown 172.8
Periaquaductal grey, lateral
nTPM: 176.1
2272 Male, age 74, both hemispheres 179.6
2053 Male, age 18, unknown 177.4
2140 Male, age 76, both hemispheres 171.2
Pretectal area
nTPM: 184.9
2007 Male, age 72, unknown 204.7
1817 Female, age 42, unknown 193.9
1944 Female, age 72, unknown 185.8
2273 Male, age 74, both hemispheres 185.2
2224 Female, age 72, unknown 183.9
2316 Male, age 76, right hemisphere 182.2
1815 Male, age 53, unknown 182.1
2825 Male, age 18, unknown 181.3
1816 Male, age 51, unknown 181.2
2667 Female, age 75, unknown 179.4
2407 Male, age 75, both hemispheres 174.4
Red nucleus
nTPM: 184.6
2785 Male, age 18, unknown 196.9
2588 Male, age 74, left hemisphere 194.9
1865 Male, age 51, unknown 186.8
2503 Female, age 72, unknown 184.7
1821 Female, age 72, unknown 184.2
2584 Male, age 75, left hemisphere 183.4
2725 Female, age 75, unknown 182.5
2823 Male, age 76, right hemisphere 181.9
1954 Female, age 42, unknown 180.4
1904 Male, age 53, unknown 180.2
2769 Male, age 72, unknown 179.7
2227 Male, age 72, unknown 179.4
Substantia nigra
nTPM: 180.2
1889 Female, age 72, unknown 192.1
2665 Male, age 74, both hemispheres 188.0
1941 Male, age 53, unknown 187.2
2590 Female, age 75, unknown 180.7
1851 Male, age 51, unknown 179.6
2409 Female, age 72, unknown 179.6
2583 Male, age 75, right hemisphere 179.3
2699 Male, age 18, unknown 172.0
2241 Male, age 72, unknown 171.9
1916 Female, age 42, unknown 171.3
Superior colliculus
nTPM: 181.6
2668 Female, age 75, unknown 184.9
1995 Male, age 72, unknown 183.8
2587 Male, age 74, left hemisphere 183.3
1895 Male, age 76, right hemisphere 182.6
2087 Female, age 72, unknown 182.1
1839 Male, age 51, unknown 181.9
2664 Male, age 75, both hemispheres 181.8
1796 Male, age 53, unknown 181.4
1913 Female, age 42, unknown 179.0
2261 Male, age 18, unknown 175.0
Ventral tegmental area
nTPM: 181.2
2223 Female, age 72, unknown 185.4
1915 Female, age 42, unknown 183.0
2021 Male, age 53, unknown 180.5
2410 Female, age 72, unknown 180.4
1942 Male, age 51, unknown 180.0
2218 Male, age 76, both hemispheres 178.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.1
Samples: 139

Max nTPM: 257.4
Min nTPM: 12.7
Std nTPM: 28.9
Median nTPM: 38.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 257.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 143.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 125.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 103.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 97.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 92.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 91.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 90.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 89.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 87.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 83.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.6
FF:10158-103A5 76 years, female 19.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.1
Pig sample Sample description nTPM
Midbrain
nTPM: 27.1
Samples: 4

Max nTPM: 35.5
Min nTPM: 18.5
Sample A Female 35.5
Sample B Female 29.3
Sample C Male 25.2
Sample D Male 18.5
Periaqueductal gray
nTPM: 25.9
Samples: 3

Max nTPM: 28.7
Min nTPM: 23.7
Sample B Female 25.2
Sample C Male 28.7
Sample D Male 23.7
Substantia nigra
nTPM: 27.7
Samples: 4

Max nTPM: 32.3
Min nTPM: 24.6
Sample A Female 32.3
Sample B Female 24.9
Sample C Male 28.8
Sample D Male 24.6
Superior colliculi
nTPM: 28.1
Samples: 4

Max nTPM: 31.9
Min nTPM: 23.4
Sample A Female 31.9
Sample B Female 23.4
Sample C Male 30.4
Sample D Male 26.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.3
Samples: 4

Max nTPM: 19.4
Min nTPM: 11.1
Sample A Male 15.7
Sample B Male 15.0
Sample C Female 11.1
Sample D Female 19.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74509440 Antisense, RP_060207_02_E12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.