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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:29.2 nTPM
HPA:29.2 nTPM
GTEx:48.1 nTPM
FANTOM5:96.4 Scaled Tags Per Million
Mouse:70.5 nTPM
Allen mouse:7.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA049905
Glial cells Medium
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 29.2
Sample id Sample description nTPM
Hippocampus
nTPM: 25.9
1898 Male, age 80, left hemisphere 29.5
1911 Female, age 85, right hemisphere 28.0
1855 Male, age 76, left hemisphere 27.7
2148 Female, age 91, left hemisphere 24.2
2529 Female, age 94, left hemisphere 24.0
2621 Female, age 67, right hemisphere 22.2
Dentate gyrus
nTPM: 27.4
1927 Female, age 91, both hemispheres 30.4
2528 Male, age 74, both hemispheres 30.2
2530 Female, age 94, left hemisphere 28.0
2246 Female, age 85, both hemispheres 27.4
2010 Male, age 76, both hemispheres 25.6
2531 Female, age 67, both hemispheres 22.9
Entorhinal gyrus
nTPM: 25.9
1938 Female, age 85, left hemisphere 31.2
2117 Female, age 91, right hemisphere 27.8
1787 Male, age 76, left hemisphere 27.1
2613 Female, age 94, left hemisphere 24.1
2764 Male, age 80, right hemisphere 23.9
2686 Male, age 75, right hemisphere 21.1
Hippocampus, CA1
nTPM: 28.7
2749 Male, age 80, left hemisphere 31.7
1873 Female, age 85, both hemispheres 29.9
2527 Male, age 74, both hemispheres 29.4
2082 Female, age 91, right hemisphere 26.6
2045 Male, age 76, both hemispheres 25.8
Hippocampus, CA2
nTPM: 28.3
2249 Male, age 74, both hemispheres 30.4
1892 Male, age 76, both hemispheres 30.1
1963 Male, age 80, left hemisphere 29.9
1940 Female, age 85, left hemisphere 27.7
2113 Female, age 91, right hemisphere 26.1
2437 Female, age 94, left hemisphere 25.4
Hippocampus, CA3
nTPM: 27.3
2137 Male, age 80, left hemisphere 32.9
2436 Male, age 74, both hemispheres 31.9
1891 Female, age 85, both hemispheres 29.7
1867 Male, age 76, both hemispheres 28.8
2861 Female, age 67, both hemispheres 22.1
2620 Female, age 94, left hemisphere 18.4
Parahippocampal cortex
nTPM: 26.3
1850 Male, age 80, both hemispheres 30.0
2250 Female, age 67, right hemisphere 29.8
1933 Female, age 85, both hemispheres 29.2
1990 Female, age 91, right hemisphere 28.6
2693 Female, age 94, both hemispheres 28.6
2245 Female, age 91, both hemispheres 25.9
2532 Female, age 72, left hemisphere 25.7
2018 Male, age 76, both hemispheres 23.9
2692 Male, age 74, both hemispheres 23.1
2622 Female, age 67, right hemisphere 18.4
Perirhinal gyrus
nTPM: 29.2
1841 Female, age 85, right hemisphere 31.5
2521 Female, age 94, right hemisphere 29.9
1794 Male, age 80, right hemisphere 28.9
1847 Female, age 91, left hemisphere 28.8
2848 Male, age 76, right hemisphere 27.2
Subiculum
nTPM: 26.0
1901 Male, age 80, both hemispheres 28.9
1977 Female, age 85, both hemispheres 28.0
2729 Female, age 91, right hemisphere 27.0
2042 Male, age 76, both hemispheres 25.9
2438 Female, age 94, left hemisphere 23.7
2619 Male, age 74, both hemispheres 22.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 48.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 48.1
Samples: 197

Max nTPM: 165.4
Min nTPM: 16.5
Std nTPM: 15.9
Median nTPM: 47.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 165.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 126.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 92.4
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 80.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 73.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 70.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 69.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 69.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 68.4
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 67.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 66.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 96.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 96.4
FF:10169-103B7 60 years, female 124.5
FF:10153-102I9 76 years, female 68.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 70.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 62.6
Samples: 4

Max nTPM: 66.5
Min nTPM: 57.7
Sample A Male 61.2
Sample B Male 66.5
Sample C Female 65.0
Sample D Female 57.7
Hippocampal formation
nTPM: 70.6
Samples: 4

Max nTPM: 75.8
Min nTPM: 66.6
Sample A Male 75.8
Sample B Male 70.4
Sample C Female 66.6
Sample D Female 69.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.8
100144112 Antisense, RP_110407_03_A08, Mouse strain C57BL/6J (56 days, male) 7.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.