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TNFSF13
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:43.7 nTPM
HPA:43.7 nTPM
GTEx:48.4 nTPM
FANTOM5:78.7 Scaled Tags Per Million
Pig:13.2 nTPM
Mouse:2.7 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA004863
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.8
1857 Female, age 85, left hemisphere 47.8
2289 Male, age 61, right hemisphere 44.5
2481 Female, age 94, left hemisphere 43.7
2290 Female, age 72, unknown 41.2
1854 Male, age 80, left hemisphere 41.0
1781 Male, age 74, unknown 39.1
2846 Female, age 79, unknown 39.1
2288 Male, age 75, left hemisphere 37.9
Claustrum
nTPM: 32.3
2196 Female, age 79, unknown 36.2
2645 Female, age 72, unknown 34.0
2568 Male, age 61, both hemispheres 32.8
2292 Female, age 85, both hemispheres 32.5
2198 Male, age 80, both hemispheres 32.4
2284 Female, age 91, both hemispheres 31.8
1956 Male, age 74, unknown 31.3
2491 Male, age 75, both hemispheres 30.4
2392 Female, age 94, both hemispheres 29.8
Globus pallidus, externus
nTPM: 43.7
2646 Male, age 61, right hemisphere 53.3
2567 Female, age 72, unknown 43.5
1996 Male, age 80, right hemisphere 43.1
2772 Female, age 79, unknown 41.9
2395 Male, age 75, both hemispheres 37.0
Globus pallidus, internus
nTPM: 39.8
2483 Female, age 94, right hemisphere 44.4
1818 Male, age 74, unknown 43.0
2037 Male, age 80, right hemisphere 42.3
2566 Female, age 72, unknown 39.4
2287 Male, age 75, right hemisphere 37.8
2778 Female, age 91, both hemispheres 37.0
2111 Female, age 85, right hemisphere 34.5
Nucleus accumbens
nTPM: 40.5
1806 Female, age 85, left hemisphere 45.6
2824 Male, age 61, right hemisphere 44.2
1856 Female, age 91, right hemisphere 42.3
1783 Male, age 74, unknown 41.6
2286 Male, age 75, left hemisphere 39.6
2698 Female, age 72, unknown 38.6
2391 Female, age 94, left hemisphere 36.3
2732 Male, age 80, right hemisphere 35.6
Nucleus basalis of Meynert
nTPM: 40.9
2569 Male, age 61, both hemispheres 56.6
2393 Male, age 80, right hemisphere 37.4
2484 Female, age 94, left hemisphere 35.8
2821 Male, age 75, both hemispheres 33.6
Nucleus of the diagonal band
nTPM: 33.6
1979 Male, age 74, unknown 35.5
1812 Female, age 91, both hemispheres 34.3
2029 Male, age 61, right hemisphere 33.2
2195 Female, age 85, both hemispheres 33.1
2775 Male, age 80, right hemisphere 31.9
Olfactory tubercle
nTPM: 33.2
2856 Male, age 75, right hemisphere 35.1
1846 Male, age 80, right hemisphere 33.6
1998 Female, age 91, both hemispheres 32.1
2487 Female, age 94, left hemisphere 32.0
Putamen
nTPM: 38.7
2489 Female, age 72, unknown 42.1
2482 Female, age 94, left hemisphere 39.5
1937 Female, age 91, right hemisphere 39.3
2466 Female, age 79, unknown 38.3
2647 Male, age 75, left hemisphere 38.1
1829 Male, age 74, unknown 37.4
1838 Male, age 80, right hemisphere 36.1
Septal nuclei
nTPM: 34.5
2059 Female, age 85, both hemispheres 39.8
2199 Male, age 80, right hemisphere 36.5
2394 Male, age 61, left hemisphere 34.5
2009 Female, age 91, both hemispheres 33.9
1960 Male, age 74, unknown 32.3
2031 Female, age 72, unknown 32.2
2629 Female, age 94, right hemisphere 32.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 48.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 48.4
Samples: 246

Max nTPM: 106.5
Min nTPM: 8.5
Std nTPM: 17.9
Median nTPM: 45.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 106.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 102.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 100.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 99.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 98.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 93.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 93.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 90.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 88.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 87.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 86.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 44.2
Samples: 246

Max nTPM: 110.8
Min nTPM: 10.6
Std nTPM: 18.2
Median nTPM: 39.8
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 110.8
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 99.9
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 94.0
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 92.3
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 91.8
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 91.5
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 91.1
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 90.2
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 85.4
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 82.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 82.4
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Brain - Putamen (basal ganglia)
Average nTPM: 48.2
Samples: 205

Max nTPM: 117.7
Min nTPM: 7.3
Std nTPM: 20.0
Median nTPM: 45.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 117.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 112.9
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 105.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 104.3
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 102.0
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 97.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 93.3
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 93.2
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 91.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 90.9
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 88.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.7
FF:10164-103B2 76 years, female 59.7
Globus pallidus
Scaled Tags Per Million: 78.7
FF:10175-103C4 60 years, female 107.3
FF:10161-103A8 76 years, female 50.0
Nucleus accumbens
Scaled Tags Per Million: 52.1
FF:10037-101F1 23-56 years, mixed 52.1
Putamen
Scaled Tags Per Million: 56.1
FF:10176-103C5 60 years, female 56.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.2
Pig sample Sample description nTPM
Caudate
nTPM: 7.9
Samples: 4

Max nTPM: 8.6
Min nTPM: 7.1
Sample A Female 7.1
Sample B Female 7.9
Sample C Male 8.6
Sample D Male 7.8
Putamen
nTPM: 13.2
Samples: 4

Max nTPM: 19.2
Min nTPM: 10.7
Sample A Female 10.7
Sample B Female 11.2
Sample C Male 19.2
Sample D Male 11.6
Septum
nTPM: 9.0
Samples: 4

Max nTPM: 10.2
Min nTPM: 7.6
Sample A Female 7.6
Sample B Female 10.0
Sample C Male 8.2
Sample D Male 10.2
Ventral pallidum
nTPM: 11.1
Samples: 4

Max nTPM: 18.9
Min nTPM: 7.0
Sample A Female 7.5
Sample B Female 18.9
Sample C Male 10.8
Sample D Male 7.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 2.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.8
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.3
Sample A Male 1.3
Sample B Male 0.8
Sample C Female 0.7
Sample D Female 0.3
Septum
nTPM: 2.2
Samples: 4

Max nTPM: 3.8
Min nTPM: 0.8
Sample A Male 0.8
Sample B Male 3.8
Sample C Female 2.9
Sample D Female 1.3
Ventral forebrain
nTPM: 2.7
Samples: 4

Max nTPM: 3.2
Min nTPM: 2.0
Sample A Male 2.6
Sample B Male 3.0
Sample C Female 3.2
Sample D Female 2.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
75934513 Antisense, RP_060606_01_F06, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
75934513 Antisense, RP_060606_01_F06, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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