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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:90.1 nTPM
HPA:90.1 nTPM
GTEx:111.2 nTPM
FANTOM5:141.7 Scaled Tags Per Million
Pig:54.9 nTPM
Mouse:104.6 nTPM
Allen mouse:6.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 90.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.8
2666 Male, age 74, left hemisphere 91.4
1870 Female, age 42, unknown 89.3
2828 Female, age 72, unknown 89.3
2586 Male, age 75, left hemisphere 88.6
1827 Male, age 72, unknown 88.0
2411 Female, age 72, unknown 87.3
2019 Male, age 18, unknown 87.2
1833 Male, age 53, unknown 87.0
1830 Male, age 51, unknown 85.1
2219 Male, age 76, both hemispheres 84.4
Dorsal raphe nucleus
nTPM: 84.9
2750 Male, age 76, both hemispheres 86.0
1828 Male, age 53, unknown 85.7
2016 Female, age 72, unknown 84.9
2298 Female, age 72, unknown 84.5
2047 Male, age 72, unknown 83.3
Inferior colliculus
nTPM: 85.1
2849 Male, age 72, unknown 86.7
1890 Male, age 53, unknown 85.6
1848 Female, age 42, unknown 84.3
2097 Female, age 72, unknown 83.7
Median raphe nucleus
nTPM: 85.5
2220 Male, age 76, midline 85.5
Pedunculopontine tegmental nucleus
nTPM: 88.5
2338 Male, age 61, both hemispheres 93.6
2334 Male, age 80, both hemispheres 86.8
1921 Female, age 85, both hemispheres 85.2
Periaquaductal grey, anterior
nTPM: 85.9
2502 Female, age 75, unknown 88.1
1795 Male, age 51, unknown 86.5
1947 Male, age 18, unknown 83.1
Periaquaductal grey, dorsal
nTPM: 84.0
2850 Male, age 76, both hemispheres 86.0
2464 Female, age 72, unknown 84.4
1831 Male, age 72, unknown 83.8
1840 Male, age 53, unknown 81.7
Periaquaductal grey, lateral
nTPM: 83.9
2140 Male, age 76, both hemispheres 86.1
2053 Male, age 18, unknown 84.0
2272 Male, age 74, both hemispheres 81.5
Pretectal area
nTPM: 85.5
1816 Male, age 51, unknown 88.0
1817 Female, age 42, unknown 87.2
2407 Male, age 75, both hemispheres 86.9
2007 Male, age 72, unknown 86.8
1815 Male, age 53, unknown 86.3
2825 Male, age 18, unknown 85.7
2667 Female, age 75, unknown 85.5
1944 Female, age 72, unknown 84.9
2224 Female, age 72, unknown 84.6
2316 Male, age 76, right hemisphere 82.5
2273 Male, age 74, both hemispheres 81.8
Red nucleus
nTPM: 90.1
2503 Female, age 72, unknown 93.3
1865 Male, age 51, unknown 92.7
2725 Female, age 75, unknown 91.6
1904 Male, age 53, unknown 91.2
1821 Female, age 72, unknown 91.0
2769 Male, age 72, unknown 90.8
2227 Male, age 72, unknown 90.4
1954 Female, age 42, unknown 89.3
2588 Male, age 74, left hemisphere 89.2
2785 Male, age 18, unknown 88.2
2584 Male, age 75, left hemisphere 87.7
2823 Male, age 76, right hemisphere 86.2
Substantia nigra
nTPM: 85.5
2699 Male, age 18, unknown 90.7
2665 Male, age 74, both hemispheres 89.2
1916 Female, age 42, unknown 87.2
1851 Male, age 51, unknown 86.8
1889 Female, age 72, unknown 86.5
1941 Male, age 53, unknown 85.3
2590 Female, age 75, unknown 85.3
2583 Male, age 75, right hemisphere 84.3
2241 Male, age 72, unknown 80.0
2409 Female, age 72, unknown 79.8
Superior colliculus
nTPM: 87.0
1995 Male, age 72, unknown 91.0
1913 Female, age 42, unknown 90.6
2587 Male, age 74, left hemisphere 89.4
1796 Male, age 53, unknown 87.4
1895 Male, age 76, right hemisphere 86.7
2664 Male, age 75, both hemispheres 86.5
2261 Male, age 18, unknown 86.1
1839 Male, age 51, unknown 84.9
2087 Female, age 72, unknown 84.0
2668 Female, age 75, unknown 83.4
Ventral tegmental area
nTPM: 86.8
2223 Female, age 72, unknown 89.0
1915 Female, age 42, unknown 88.7
2410 Female, age 72, unknown 86.6
2021 Male, age 53, unknown 86.2
2218 Male, age 76, both hemispheres 85.8
1942 Male, age 51, unknown 84.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 111.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 111.2
Samples: 139

Max nTPM: 243.5
Min nTPM: 56.5
Std nTPM: 26.9
Median nTPM: 107.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 243.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 196.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 187.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 172.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 167.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 163.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 160.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 158.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 157.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 157.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 157.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 141.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 141.7
FF:10158-103A5 76 years, female 141.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.9
Pig sample Sample description nTPM
Midbrain
nTPM: 54.3
Samples: 4

Max nTPM: 81.6
Min nTPM: 38.2
Sample A Female 81.6
Sample B Female 52.3
Sample C Male 45.1
Sample D Male 38.2
Periaqueductal gray
nTPM: 42.1
Samples: 3

Max nTPM: 45.5
Min nTPM: 38.6
Sample B Female 42.3
Sample C Male 45.5
Sample D Male 38.6
Substantia nigra
nTPM: 53.2
Samples: 4

Max nTPM: 66.2
Min nTPM: 45.4
Sample A Female 66.2
Sample B Female 45.4
Sample C Male 51.6
Sample D Male 49.4
Superior colliculi
nTPM: 54.9
Samples: 4

Max nTPM: 64.7
Min nTPM: 48.2
Sample A Female 64.7
Sample B Female 48.2
Sample C Male 55.9
Sample D Male 50.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 104.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.6
Samples: 4

Max nTPM: 119.8
Min nTPM: 90.3
Sample A Male 119.8
Sample B Male 102.0
Sample C Female 90.3
Sample D Female 106.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.3
71992097 Antisense, RP_051012_04_B07, Mouse strain C57BL/6J (56 days, male) 6.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.