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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.6 nTPM
HPA:56.6 nTPM
GTEx:46.2 nTPM
FANTOM5:40.6 Scaled Tags Per Million
Pig:27.4 nTPM
Mouse:43.6 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.9
2019 Male, age 18, unknown 55.9
2411 Female, age 72, unknown 55.9
1833 Male, age 53, unknown 55.8
1870 Female, age 42, unknown 55.5
1827 Male, age 72, unknown 55.4
2828 Female, age 72, unknown 55.0
2219 Male, age 76, both hemispheres 54.4
1830 Male, age 51, unknown 54.2
2586 Male, age 75, left hemisphere 53.8
2666 Male, age 74, left hemisphere 53.3
Dorsal raphe nucleus
nTPM: 55.8
2298 Female, age 72, unknown 57.0
2047 Male, age 72, unknown 56.0
1828 Male, age 53, unknown 55.6
2016 Female, age 72, unknown 55.4
2750 Male, age 76, both hemispheres 55.2
Inferior colliculus
nTPM: 55.5
2849 Male, age 72, unknown 55.9
1848 Female, age 42, unknown 55.6
2097 Female, age 72, unknown 55.3
1890 Male, age 53, unknown 55.1
Median raphe nucleus
nTPM: 56.6
2220 Male, age 76, midline 56.6
Pedunculopontine tegmental nucleus
nTPM: 56.3
2338 Male, age 61, both hemispheres 57.1
2334 Male, age 80, both hemispheres 56.1
1921 Female, age 85, both hemispheres 55.7
Periaquaductal grey, anterior
nTPM: 55.8
1795 Male, age 51, unknown 56.1
2502 Female, age 75, unknown 56.0
1947 Male, age 18, unknown 55.4
Periaquaductal grey, dorsal
nTPM: 55.6
1840 Male, age 53, unknown 56.7
2850 Male, age 76, both hemispheres 56.6
2464 Female, age 72, unknown 54.9
1831 Male, age 72, unknown 54.3
Periaquaductal grey, lateral
nTPM: 56.1
2272 Male, age 74, both hemispheres 56.7
2140 Male, age 76, both hemispheres 56.3
2053 Male, age 18, unknown 55.3
Pretectal area
nTPM: 56.0
2667 Female, age 75, unknown 57.6
2007 Male, age 72, unknown 56.9
1817 Female, age 42, unknown 56.7
2273 Male, age 74, both hemispheres 56.5
2316 Male, age 76, right hemisphere 56.2
1815 Male, age 53, unknown 56.1
1944 Female, age 72, unknown 55.8
2407 Male, age 75, both hemispheres 55.3
2825 Male, age 18, unknown 55.3
1816 Male, age 51, unknown 55.1
2224 Female, age 72, unknown 54.7
Red nucleus
nTPM: 55.5
1821 Female, age 72, unknown 57.4
1865 Male, age 51, unknown 56.7
2823 Male, age 76, right hemisphere 56.3
2785 Male, age 18, unknown 56.2
2227 Male, age 72, unknown 55.6
2503 Female, age 72, unknown 55.6
1954 Female, age 42, unknown 55.4
2769 Male, age 72, unknown 55.3
1904 Male, age 53, unknown 55.0
2725 Female, age 75, unknown 54.9
2588 Male, age 74, left hemisphere 54.6
2584 Male, age 75, left hemisphere 52.8
Substantia nigra
nTPM: 55.5
1916 Female, age 42, unknown 56.9
1889 Female, age 72, unknown 56.6
1851 Male, age 51, unknown 56.1
2590 Female, age 75, unknown 55.7
1941 Male, age 53, unknown 55.3
2409 Female, age 72, unknown 55.3
2699 Male, age 18, unknown 55.2
2241 Male, age 72, unknown 54.8
2665 Male, age 74, both hemispheres 54.6
2583 Male, age 75, right hemisphere 53.9
Superior colliculus
nTPM: 55.4
1913 Female, age 42, unknown 56.0
2587 Male, age 74, left hemisphere 56.0
1895 Male, age 76, right hemisphere 55.9
1796 Male, age 53, unknown 55.8
2261 Male, age 18, unknown 55.6
1995 Male, age 72, unknown 55.5
2087 Female, age 72, unknown 55.2
2664 Male, age 75, both hemispheres 55.0
1839 Male, age 51, unknown 54.7
2668 Female, age 75, unknown 54.1
Ventral tegmental area
nTPM: 55.3
1915 Female, age 42, unknown 55.9
2410 Female, age 72, unknown 55.9
1942 Male, age 51, unknown 55.4
2218 Male, age 76, both hemispheres 55.3
2223 Female, age 72, unknown 55.3
2021 Male, age 53, unknown 54.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.2
Samples: 139

Max nTPM: 99.1
Min nTPM: 28.2
Std nTPM: 10.9
Median nTPM: 45.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 99.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 81.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 76.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 73.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 72.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 66.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 66.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 65.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 63.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 62.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 60.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.6
FF:10158-103A5 76 years, female 40.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.4
Pig sample Sample description nTPM
Midbrain
nTPM: 27.4
Samples: 4

Max nTPM: 36.9
Min nTPM: 22.8
Sample A Female 36.9
Sample B Female 27.0
Sample C Male 22.8
Sample D Male 22.9
Periaqueductal gray
nTPM: 22.8
Samples: 3

Max nTPM: 23.4
Min nTPM: 22.4
Sample B Female 22.4
Sample C Male 23.4
Sample D Male 22.5
Substantia nigra
nTPM: 25.5
Samples: 4

Max nTPM: 31.4
Min nTPM: 21.2
Sample A Female 31.4
Sample B Female 23.5
Sample C Male 25.7
Sample D Male 21.2
Superior colliculi
nTPM: 25.5
Samples: 4

Max nTPM: 29.5
Min nTPM: 21.8
Sample A Female 29.5
Sample B Female 21.8
Sample C Male 25.8
Sample D Male 25.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.6
Samples: 4

Max nTPM: 47.8
Min nTPM: 38.3
Sample A Male 47.8
Sample B Male 45.1
Sample C Female 38.3
Sample D Female 43.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
556980 Antisense, RP_040825_02_G01, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.