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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:84.1 nTPM
HPA:84.1 nTPM
GTEx:67.0 nTPM
FANTOM5:30.1 Scaled Tags Per Million
Pig:93.0 nTPM
Mouse:135.7 nTPM
Allen mouse:12.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.7
2586 Male, age 75, left hemisphere 101.6
2666 Male, age 74, left hemisphere 80.1
2219 Male, age 76, both hemispheres 79.9
1827 Male, age 72, unknown 63.1
2828 Female, age 72, unknown 52.2
2411 Female, age 72, unknown 49.7
1833 Male, age 53, unknown 44.9
2019 Male, age 18, unknown 43.7
1870 Female, age 42, unknown 42.5
1830 Male, age 51, unknown 38.9
Dorsal raphe nucleus
nTPM: 66.5
2047 Male, age 72, unknown 83.6
1828 Male, age 53, unknown 82.4
2298 Female, age 72, unknown 76.8
2750 Male, age 76, both hemispheres 47.9
2016 Female, age 72, unknown 41.8
Inferior colliculus
nTPM: 47.4
1848 Female, age 42, unknown 55.6
2849 Male, age 72, unknown 54.7
2097 Female, age 72, unknown 41.1
1890 Male, age 53, unknown 38.2
Median raphe nucleus
nTPM: 72.4
2220 Male, age 76, midline 72.4
Pedunculopontine tegmental nucleus
nTPM: 52.2
2334 Male, age 80, both hemispheres 67.0
1921 Female, age 85, both hemispheres 56.3
2338 Male, age 61, both hemispheres 33.4
Periaquaductal grey, anterior
nTPM: 64.6
1795 Male, age 51, unknown 75.9
1947 Male, age 18, unknown 69.2
2502 Female, age 75, unknown 48.6
Periaquaductal grey, dorsal
nTPM: 48.2
1840 Male, age 53, unknown 64.1
2850 Male, age 76, both hemispheres 50.0
1831 Male, age 72, unknown 40.7
2464 Female, age 72, unknown 37.9
Periaquaductal grey, lateral
nTPM: 44.2
2140 Male, age 76, both hemispheres 45.5
2053 Male, age 18, unknown 44.2
2272 Male, age 74, both hemispheres 42.9
Pretectal area
nTPM: 66.8
1816 Male, age 51, unknown 92.9
2407 Male, age 75, both hemispheres 89.7
1944 Female, age 72, unknown 78.6
1817 Female, age 42, unknown 74.5
2007 Male, age 72, unknown 71.5
2667 Female, age 75, unknown 69.9
1815 Male, age 53, unknown 65.6
2224 Female, age 72, unknown 59.2
2825 Male, age 18, unknown 53.8
2273 Male, age 74, both hemispheres 49.1
2316 Male, age 76, right hemisphere 30.4
Red nucleus
nTPM: 27.4
2584 Male, age 75, left hemisphere 80.0
2785 Male, age 18, unknown 43.6
1821 Female, age 72, unknown 33.0
1954 Female, age 42, unknown 28.2
2769 Male, age 72, unknown 26.3
2227 Male, age 72, unknown 26.1
1865 Male, age 51, unknown 21.4
1904 Male, age 53, unknown 17.8
2503 Female, age 72, unknown 17.0
2823 Male, age 76, right hemisphere 14.9
2588 Male, age 74, left hemisphere 14.0
2725 Female, age 75, unknown 6.5
Substantia nigra
nTPM: 84.1
1916 Female, age 42, unknown 104.0
2590 Female, age 75, unknown 103.1
2665 Male, age 74, both hemispheres 96.4
1851 Male, age 51, unknown 92.6
2583 Male, age 75, right hemisphere 91.3
1941 Male, age 53, unknown 90.5
2241 Male, age 72, unknown 74.3
1889 Female, age 72, unknown 72.2
2699 Male, age 18, unknown 61.0
2409 Female, age 72, unknown 55.2
Superior colliculus
nTPM: 63.8
2664 Male, age 75, both hemispheres 120.2
2668 Female, age 75, unknown 112.7
2261 Male, age 18, unknown 70.4
1796 Male, age 53, unknown 70.2
2087 Female, age 72, unknown 68.8
1839 Male, age 51, unknown 49.7
1895 Male, age 76, right hemisphere 43.1
1995 Male, age 72, unknown 35.6
1913 Female, age 42, unknown 35.5
2587 Male, age 74, left hemisphere 31.3
Ventral tegmental area
nTPM: 66.2
2218 Male, age 76, both hemispheres 74.1
1915 Female, age 42, unknown 73.7
2410 Female, age 72, unknown 71.6
1942 Male, age 51, unknown 62.6
2223 Female, age 72, unknown 60.8
2021 Male, age 53, unknown 54.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 67.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.0
Samples: 139

Max nTPM: 228.9
Min nTPM: 6.1
Std nTPM: 37.4
Median nTPM: 60.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 228.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 224.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 163.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 155.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 138.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 134.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 132.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 130.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 129.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 129.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 124.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.1
FF:10158-103A5 76 years, female 30.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 93.0
Pig sample Sample description nTPM
Midbrain
nTPM: 84.2
Samples: 4

Max nTPM: 132.0
Min nTPM: 39.8
Sample A Female 39.8
Sample B Female 59.2
Sample C Male 132.0
Sample D Male 105.7
Periaqueductal gray
nTPM: 69.7
Samples: 3

Max nTPM: 92.8
Min nTPM: 55.6
Sample B Female 55.6
Sample C Male 92.8
Sample D Male 60.6
Substantia nigra
nTPM: 90.7
Samples: 4

Max nTPM: 134.1
Min nTPM: 23.4
Sample A Female 134.1
Sample B Female 73.0
Sample C Male 132.1
Sample D Male 23.4
Superior colliculi
nTPM: 93.0
Samples: 4

Max nTPM: 122.1
Min nTPM: 50.3
Sample A Female 91.8
Sample B Female 50.3
Sample C Male 122.1
Sample D Male 107.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 135.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 135.7
Samples: 4

Max nTPM: 147.9
Min nTPM: 124.2
Sample A Male 124.2
Sample B Male 139.1
Sample C Female 147.9
Sample D Female 131.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.6
69169911 Antisense, RP_050321_04_D11, Mouse strain C57BL/6J (56 days, male) 12.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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