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KCNF1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:28.8 nTPM
HPA:28.8 nTPM
GTEx:29.0 nTPM
FANTOM5:25.8 Scaled Tags Per Million
Pig:65.2 nTPM
Mouse:63.6 nTPM
Allen mouse:10.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA062278
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 28.8
Sample id Sample description nTPM
Hippocampus
nTPM: 14.8
1898 Male, age 80, left hemisphere 18.0
2529 Female, age 94, left hemisphere 15.3
1855 Male, age 76, left hemisphere 15.2
1911 Female, age 85, right hemisphere 15.0
2148 Female, age 91, left hemisphere 12.6
2621 Female, age 67, right hemisphere 12.6
Dentate gyrus
nTPM: 14.4
2531 Female, age 67, both hemispheres 24.2
1927 Female, age 91, both hemispheres 19.1
2010 Male, age 76, both hemispheres 13.4
2246 Female, age 85, both hemispheres 10.1
2530 Female, age 94, left hemisphere 10.0
2528 Male, age 74, both hemispheres 9.3
Entorhinal gyrus
nTPM: 28.8
2613 Female, age 94, left hemisphere 54.5
1787 Male, age 76, left hemisphere 30.8
1938 Female, age 85, left hemisphere 30.4
2764 Male, age 80, right hemisphere 27.2
2686 Male, age 75, right hemisphere 20.8
2117 Female, age 91, right hemisphere 9.3
Hippocampus, CA1
nTPM: 19.6
2045 Male, age 76, both hemispheres 34.7
2749 Male, age 80, left hemisphere 31.7
2527 Male, age 74, both hemispheres 12.6
1873 Female, age 85, both hemispheres 9.8
2082 Female, age 91, right hemisphere 9.2
Hippocampus, CA2
nTPM: 15.3
1892 Male, age 76, both hemispheres 29.1
2437 Female, age 94, left hemisphere 18.2
2249 Male, age 74, both hemispheres 15.7
1963 Male, age 80, left hemisphere 11.0
2113 Female, age 91, right hemisphere 10.2
1940 Female, age 85, left hemisphere 7.6
Hippocampus, CA3
nTPM: 26.3
1867 Male, age 76, both hemispheres 35.9
2436 Male, age 74, both hemispheres 33.2
2137 Male, age 80, left hemisphere 32.6
2861 Female, age 67, both hemispheres 22.3
2620 Female, age 94, left hemisphere 19.7
1891 Female, age 85, both hemispheres 13.9
Parahippocampal cortex
nTPM: 19.2
1990 Female, age 91, right hemisphere 30.2
1850 Male, age 80, both hemispheres 21.7
1933 Female, age 85, both hemispheres 21.7
2018 Male, age 76, both hemispheres 19.5
2622 Female, age 67, right hemisphere 19.1
2532 Female, age 72, left hemisphere 18.9
2245 Female, age 91, both hemispheres 17.2
2692 Male, age 74, both hemispheres 15.6
2250 Female, age 67, right hemisphere 14.3
2693 Female, age 94, both hemispheres 14.0
Perirhinal gyrus
nTPM: 20.0
1847 Female, age 91, left hemisphere 31.7
1841 Female, age 85, right hemisphere 19.4
2848 Male, age 76, right hemisphere 17.1
1794 Male, age 80, right hemisphere 16.9
2521 Female, age 94, right hemisphere 14.9
Subiculum
nTPM: 17.3
1977 Female, age 85, both hemispheres 26.7
1901 Male, age 80, both hemispheres 21.9
2438 Female, age 94, left hemisphere 18.6
2042 Male, age 76, both hemispheres 14.3
2619 Male, age 74, both hemispheres 14.2
2729 Female, age 91, right hemisphere 8.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 29.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 29.0
Samples: 197

Max nTPM: 107.6
Min nTPM: 1.3
Std nTPM: 16.4
Median nTPM: 25.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 107.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 85.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 79.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 74.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 67.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 64.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 62.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 60.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 60.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 59.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 55.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 25.8
FF:10153-102I9 76 years, female 26.5
FF:10169-103B7 60 years, female 25.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 65.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 27.6
Samples: 4

Max nTPM: 49.0
Min nTPM: 11.3
Sample A Female 24.6
Sample B Female 25.3
Sample C Male 49.0
Sample D Male 11.3
Entorhinal cortex
nTPM: 65.2
Samples: 4

Max nTPM: 67.9
Min nTPM: 61.4
Sample A Female 66.6
Sample B Female 64.7
Sample C Male 61.4
Sample D Male 67.9
Subiculum
nTPM: 39.5
Samples: 4

Max nTPM: 55.0
Min nTPM: 31.4
Sample A Female 55.0
Sample B Female 31.4
Sample C Male 38.3
Sample D Male 33.1
Ventral hippocampus
nTPM: 25.5
Samples: 4

Max nTPM: 37.1
Min nTPM: 14.6
Sample A Female 14.6
Sample B Female 19.9
Sample C Male 37.1
Sample D Male 30.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 63.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 63.6
Samples: 4

Max nTPM: 84.0
Min nTPM: 48.6
Sample A Male 55.4
Sample B Male 66.3
Sample C Female 48.6
Sample D Female 84.0
Hippocampal formation
nTPM: 25.1
Samples: 4

Max nTPM: 29.6
Min nTPM: 21.1
Sample A Male 29.6
Sample B Male 24.3
Sample C Female 21.1
Sample D Female 25.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.0
71358578 Antisense, RP_050725_03_E07, Mouse strain C57BL/6J (56 days, male) 10.4
68798944 Antisense, RP_050217_01_F05, Mouse strain C57BL/6J (56 days, male) 9.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.