ABOUTMENU
HELP
NEWS
CFAP36
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.4 nTPM
HPA:70.4 nTPM
GTEx:72.4 nTPM
FANTOM5:55.4 Scaled Tags Per Million
Pig:16.5 nTPM
Mouse:114.5 nTPM
Allen mouse:10.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.7
1827 Male, age 72, unknown 65.2
1870 Female, age 42, unknown 64.2
2666 Male, age 74, left hemisphere 63.7
1833 Male, age 53, unknown 62.5
2411 Female, age 72, unknown 62.4
2219 Male, age 76, both hemispheres 62.2
1830 Male, age 51, unknown 60.9
2019 Male, age 18, unknown 60.4
2828 Female, age 72, unknown 59.2
2586 Male, age 75, left hemisphere 56.1
Dorsal raphe nucleus
nTPM: 64.7
2298 Female, age 72, unknown 67.7
1828 Male, age 53, unknown 65.0
2047 Male, age 72, unknown 64.4
2016 Female, age 72, unknown 63.4
2750 Male, age 76, both hemispheres 63.2
Inferior colliculus
nTPM: 66.2
2849 Male, age 72, unknown 68.8
2097 Female, age 72, unknown 67.7
1848 Female, age 42, unknown 65.3
1890 Male, age 53, unknown 62.9
Median raphe nucleus
nTPM: 70.4
2220 Male, age 76, midline 70.4
Pedunculopontine tegmental nucleus
nTPM: 66.7
2334 Male, age 80, both hemispheres 67.5
2338 Male, age 61, both hemispheres 66.9
1921 Female, age 85, both hemispheres 65.9
Periaquaductal grey, anterior
nTPM: 63.3
1947 Male, age 18, unknown 66.6
1795 Male, age 51, unknown 63.5
2502 Female, age 75, unknown 59.6
Periaquaductal grey, dorsal
nTPM: 65.9
2850 Male, age 76, both hemispheres 69.3
1840 Male, age 53, unknown 65.8
1831 Male, age 72, unknown 64.6
2464 Female, age 72, unknown 63.7
Periaquaductal grey, lateral
nTPM: 65.7
2272 Male, age 74, both hemispheres 68.2
2140 Male, age 76, both hemispheres 65.3
2053 Male, age 18, unknown 63.7
Pretectal area
nTPM: 65.3
2273 Male, age 74, both hemispheres 68.7
1944 Female, age 72, unknown 68.0
1816 Male, age 51, unknown 67.8
2224 Female, age 72, unknown 67.5
2667 Female, age 75, unknown 65.9
2825 Male, age 18, unknown 65.2
1817 Female, age 42, unknown 65.0
2007 Male, age 72, unknown 64.0
1815 Male, age 53, unknown 63.1
2407 Male, age 75, both hemispheres 61.8
2316 Male, age 76, right hemisphere 61.0
Red nucleus
nTPM: 60.5
2725 Female, age 75, unknown 63.2
1821 Female, age 72, unknown 62.6
1954 Female, age 42, unknown 61.8
2584 Male, age 75, left hemisphere 61.0
2823 Male, age 76, right hemisphere 60.7
2503 Female, age 72, unknown 60.6
2588 Male, age 74, left hemisphere 60.6
2227 Male, age 72, unknown 60.4
2785 Male, age 18, unknown 60.2
2769 Male, age 72, unknown 59.4
1865 Male, age 51, unknown 57.7
1904 Male, age 53, unknown 57.5
Substantia nigra
nTPM: 66.3
1941 Male, age 53, unknown 77.3
2241 Male, age 72, unknown 71.9
1916 Female, age 42, unknown 69.2
1889 Female, age 72, unknown 65.4
2699 Male, age 18, unknown 64.7
1851 Male, age 51, unknown 64.2
2590 Female, age 75, unknown 64.0
2665 Male, age 74, both hemispheres 62.4
2409 Female, age 72, unknown 62.1
2583 Male, age 75, right hemisphere 61.4
Superior colliculus
nTPM: 63.0
1895 Male, age 76, right hemisphere 66.4
1839 Male, age 51, unknown 66.1
2087 Female, age 72, unknown 65.2
2668 Female, age 75, unknown 64.8
2587 Male, age 74, left hemisphere 64.4
2261 Male, age 18, unknown 63.8
1796 Male, age 53, unknown 63.2
2664 Male, age 75, both hemispheres 61.2
1913 Female, age 42, unknown 58.7
1995 Male, age 72, unknown 56.7
Ventral tegmental area
nTPM: 63.7
1915 Female, age 42, unknown 65.9
2218 Male, age 76, both hemispheres 65.8
2223 Female, age 72, unknown 64.1
1942 Male, age 51, unknown 63.3
2021 Male, age 53, unknown 62.0
2410 Female, age 72, unknown 61.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 72.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.4
Samples: 139

Max nTPM: 228.8
Min nTPM: 40.0
Std nTPM: 21.4
Median nTPM: 68.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 228.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 151.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 122.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 115.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 108.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 102.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 100.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 100.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 99.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 99.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 98.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.4
FF:10158-103A5 76 years, female 55.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.5
Pig sample Sample description nTPM
Midbrain
nTPM: 15.1
Samples: 4

Max nTPM: 19.7
Min nTPM: 8.7
Sample A Female 8.7
Sample B Female 12.6
Sample C Male 19.7
Sample D Male 19.3
Periaqueductal gray
nTPM: 12.8
Samples: 3

Max nTPM: 15.5
Min nTPM: 11.4
Sample B Female 11.4
Sample C Male 15.5
Sample D Male 11.5
Substantia nigra
nTPM: 12.3
Samples: 4

Max nTPM: 17.5
Min nTPM: 7.0
Sample A Female 17.5
Sample B Female 10.2
Sample C Male 14.6
Sample D Male 7.0
Superior colliculi
nTPM: 16.5
Samples: 4

Max nTPM: 20.2
Min nTPM: 11.6
Sample A Female 19.0
Sample B Female 11.6
Sample C Male 20.2
Sample D Male 15.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 114.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 114.5
Samples: 4

Max nTPM: 117.9
Min nTPM: 111.1
Sample A Male 111.1
Sample B Male 116.9
Sample C Female 117.9
Sample D Female 111.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
76081944 Antisense, RP_060626_01_B04, Mouse strain C57BL/6J (56 days, male) 10.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.