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SMC6
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:8.0 nTPM
HPA:8.0 nTPM
GTEx:5.4 nTPM
FANTOM5:13.3 Scaled Tags Per Million
Pig:13.7 nTPM
Mouse:17.9 nTPM
Allen mouse:1.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042733Antibody CAB037186
Glial cells Not detectedNot detected
Neuronal cells LowLow



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 8.0
Sample id Sample description nTPM
Hippocampus
nTPM: 5.7
1911 Female, age 85, right hemisphere 6.7
2621 Female, age 67, right hemisphere 6.5
1898 Male, age 80, left hemisphere 5.8
2148 Female, age 91, left hemisphere 5.5
2529 Female, age 94, left hemisphere 5.0
1855 Male, age 76, left hemisphere 4.7
Dentate gyrus
nTPM: 6.2
2246 Female, age 85, both hemispheres 6.8
2531 Female, age 67, both hemispheres 6.6
1927 Female, age 91, both hemispheres 6.4
2010 Male, age 76, both hemispheres 6.2
2528 Male, age 74, both hemispheres 5.7
2530 Female, age 94, left hemisphere 5.2
Entorhinal gyrus
nTPM: 8.0
2613 Female, age 94, left hemisphere 11.2
1938 Female, age 85, left hemisphere 9.9
1787 Male, age 76, left hemisphere 7.7
2764 Male, age 80, right hemisphere 6.8
2117 Female, age 91, right hemisphere 6.4
2686 Male, age 75, right hemisphere 6.2
Hippocampus, CA1
nTPM: 5.6
2082 Female, age 91, right hemisphere 6.5
1873 Female, age 85, both hemispheres 5.9
2045 Male, age 76, both hemispheres 5.9
2527 Male, age 74, both hemispheres 5.4
2749 Male, age 80, left hemisphere 4.4
Hippocampus, CA2
nTPM: 6.0
1892 Male, age 76, both hemispheres 8.0
2249 Male, age 74, both hemispheres 6.8
2113 Female, age 91, right hemisphere 5.7
1963 Male, age 80, left hemisphere 5.3
1940 Female, age 85, left hemisphere 5.2
2437 Female, age 94, left hemisphere 4.9
Hippocampus, CA3
nTPM: 7.3
2436 Male, age 74, both hemispheres 13.7
1891 Female, age 85, both hemispheres 7.0
2861 Female, age 67, both hemispheres 6.6
1867 Male, age 76, both hemispheres 6.4
2137 Male, age 80, left hemisphere 5.4
2620 Female, age 94, left hemisphere 4.6
Parahippocampal cortex
nTPM: 7.0
1933 Female, age 85, both hemispheres 8.3
2692 Male, age 74, both hemispheres 8.0
2622 Female, age 67, right hemisphere 7.6
1850 Male, age 80, both hemispheres 7.4
1990 Female, age 91, right hemisphere 7.4
2693 Female, age 94, both hemispheres 7.3
2250 Female, age 67, right hemisphere 6.2
2532 Female, age 72, left hemisphere 6.2
2018 Male, age 76, both hemispheres 6.1
2245 Female, age 91, both hemispheres 5.7
Perirhinal gyrus
nTPM: 6.9
2848 Male, age 76, right hemisphere 7.9
1847 Female, age 91, left hemisphere 7.3
1841 Female, age 85, right hemisphere 6.9
2521 Female, age 94, right hemisphere 6.7
1794 Male, age 80, right hemisphere 5.8
Subiculum
nTPM: 6.1
1977 Female, age 85, both hemispheres 7.5
1901 Male, age 80, both hemispheres 6.9
2438 Female, age 94, left hemisphere 6.8
2042 Male, age 76, both hemispheres 5.9
2619 Male, age 74, both hemispheres 5.2
2729 Female, age 91, right hemisphere 4.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 5.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 5.4
Samples: 197

Max nTPM: 12.1
Min nTPM: 2.4
Std nTPM: 1.4
Median nTPM: 5.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 12.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 10.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 9.6
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 9.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 9.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 9.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 8.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 8.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 8.4
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 8.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 8.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 13.3
FF:10169-103B7 60 years, female 14.6
FF:10153-102I9 76 years, female 11.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 13.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 13.7
Samples: 4

Max nTPM: 15.7
Min nTPM: 12.8
Sample A Female 13.3
Sample B Female 12.8
Sample C Male 15.7
Sample D Male 12.9
Entorhinal cortex
nTPM: 11.1
Samples: 4

Max nTPM: 11.5
Min nTPM: 10.8
Sample A Female 10.8
Sample B Female 11.5
Sample C Male 11.1
Sample D Male 11.1
Subiculum
nTPM: 12.7
Samples: 4

Max nTPM: 15.0
Min nTPM: 11.7
Sample A Female 15.0
Sample B Female 11.7
Sample C Male 12.1
Sample D Male 12.0
Ventral hippocampus
nTPM: 12.0
Samples: 4

Max nTPM: 14.1
Min nTPM: 8.9
Sample A Female 11.4
Sample B Female 13.4
Sample C Male 8.9
Sample D Male 14.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 17.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 17.8
Samples: 4

Max nTPM: 20.0
Min nTPM: 13.3
Sample A Male 18.0
Sample B Male 20.0
Sample C Female 20.0
Sample D Female 13.3
Hippocampal formation
nTPM: 17.9
Samples: 4

Max nTPM: 21.1
Min nTPM: 13.4
Sample A Male 21.1
Sample B Male 19.6
Sample C Female 17.6
Sample D Female 13.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.1
69169785 Antisense, RP_050321_04_C01, Mouse strain C57BL/6J (56 days, male) 1.1

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