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H3-3A
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:247.1 nTPM
HPA:247.1 nTPM
GTEx:320.0 nTPM
FANTOM5:35.0 Scaled Tags Per Million
Mouse:420.2 nTPM
Allen mouse:3.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 247.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 230.6
1870 Female, age 42, unknown 255.3
2411 Female, age 72, unknown 243.2
1833 Male, age 53, unknown 237.7
2019 Male, age 18, unknown 235.2
1830 Male, age 51, unknown 234.7
2219 Male, age 76, both hemispheres 234.5
2828 Female, age 72, unknown 233.4
1827 Male, age 72, unknown 229.4
2666 Male, age 74, left hemisphere 205.0
2586 Male, age 75, left hemisphere 197.9
Dorsal raphe nucleus
nTPM: 242.8
2298 Female, age 72, unknown 258.5
2016 Female, age 72, unknown 250.3
2750 Male, age 76, both hemispheres 249.4
1828 Male, age 53, unknown 235.0
2047 Male, age 72, unknown 220.7
Inferior colliculus
nTPM: 238.2
2097 Female, age 72, unknown 254.0
1890 Male, age 53, unknown 238.6
1848 Female, age 42, unknown 237.6
2849 Male, age 72, unknown 222.7
Median raphe nucleus
nTPM: 222.9
2220 Male, age 76, midline 222.9
Pedunculopontine tegmental nucleus
nTPM: 247.1
2338 Male, age 61, both hemispheres 255.3
2334 Male, age 80, both hemispheres 244.1
1921 Female, age 85, both hemispheres 242.0
Periaquaductal grey, anterior
nTPM: 234.1
2502 Female, age 75, unknown 254.6
1795 Male, age 51, unknown 224.7
1947 Male, age 18, unknown 223.1
Periaquaductal grey, dorsal
nTPM: 239.9
2850 Male, age 76, both hemispheres 241.9
1831 Male, age 72, unknown 240.0
2464 Female, age 72, unknown 239.3
1840 Male, age 53, unknown 238.2
Periaquaductal grey, lateral
nTPM: 240.9
2272 Male, age 74, both hemispheres 249.8
2053 Male, age 18, unknown 239.0
2140 Male, age 76, both hemispheres 234.0
Pretectal area
nTPM: 239.2
2273 Male, age 74, both hemispheres 263.3
2224 Female, age 72, unknown 254.5
2316 Male, age 76, right hemisphere 250.9
2667 Female, age 75, unknown 245.0
1815 Male, age 53, unknown 237.0
1944 Female, age 72, unknown 234.8
1817 Female, age 42, unknown 233.3
2825 Male, age 18, unknown 233.0
1816 Male, age 51, unknown 229.0
2007 Male, age 72, unknown 227.6
2407 Male, age 75, both hemispheres 222.9
Red nucleus
nTPM: 243.6
1904 Male, age 53, unknown 258.7
2227 Male, age 72, unknown 258.1
2503 Female, age 72, unknown 255.9
1821 Female, age 72, unknown 254.4
1954 Female, age 42, unknown 254.3
2823 Male, age 76, right hemisphere 252.8
2769 Male, age 72, unknown 252.4
1865 Male, age 51, unknown 249.0
2785 Male, age 18, unknown 245.3
2725 Female, age 75, unknown 225.0
2588 Male, age 74, left hemisphere 208.7
2584 Male, age 75, left hemisphere 208.4
Substantia nigra
nTPM: 225.9
1889 Female, age 72, unknown 237.2
2699 Male, age 18, unknown 234.6
1851 Male, age 51, unknown 234.2
2409 Female, age 72, unknown 231.9
2590 Female, age 75, unknown 227.6
2241 Male, age 72, unknown 225.9
1916 Female, age 42, unknown 220.8
2665 Male, age 74, both hemispheres 218.6
1941 Male, age 53, unknown 215.9
2583 Male, age 75, right hemisphere 212.4
Superior colliculus
nTPM: 237.7
1995 Male, age 72, unknown 264.0
1913 Female, age 42, unknown 262.6
2587 Male, age 74, left hemisphere 243.7
1895 Male, age 76, right hemisphere 240.7
1839 Male, age 51, unknown 233.7
2087 Female, age 72, unknown 232.9
2261 Male, age 18, unknown 232.9
1796 Male, age 53, unknown 231.0
2668 Female, age 75, unknown 225.3
2664 Male, age 75, both hemispheres 209.9
Ventral tegmental area
nTPM: 233.2
2223 Female, age 72, unknown 236.6
2218 Male, age 76, both hemispheres 235.7
2021 Male, age 53, unknown 233.9
2410 Female, age 72, unknown 232.0
1942 Male, age 51, unknown 231.2
1915 Female, age 42, unknown 229.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 320.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 320.0
Samples: 139

Max nTPM: 666.0
Min nTPM: 128.9
Std nTPM: 86.4
Median nTPM: 317.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 666.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 528.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 528.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 516.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 499.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 473.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 470.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 448.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 447.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 446.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 441.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.0
FF:10158-103A5 76 years, female 35.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 420.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 420.2
Samples: 4

Max nTPM: 439.8
Min nTPM: 399.5
Sample A Male 439.8
Sample B Male 399.5
Sample C Female 418.0
Sample D Female 423.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
632507 Antisense, RP_040907_01_F04, Mouse strain C57BL/6J (56 days, male) 3.8

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The Human Protein Atlas

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