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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:10.4 nTPM
HPA:10.4 nTPM
GTEx:10.9 nTPM
FANTOM5:9.5 Scaled Tags Per Million
Pig:9.8 nTPM
Mouse:20.2 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042297
Glial cells High
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 10.4
Sample id Sample description nTPM
Hippocampus
nTPM: 9.6
1855 Male, age 76, left hemisphere 11.5
1911 Female, age 85, right hemisphere 10.9
2148 Female, age 91, left hemisphere 9.6
2529 Female, age 94, left hemisphere 8.8
1898 Male, age 80, left hemisphere 8.5
2621 Female, age 67, right hemisphere 8.3
Dentate gyrus
nTPM: 10.4
2010 Male, age 76, both hemispheres 11.9
2531 Female, age 67, both hemispheres 11.5
2530 Female, age 94, left hemisphere 10.9
1927 Female, age 91, both hemispheres 9.8
2528 Male, age 74, both hemispheres 9.7
2246 Female, age 85, both hemispheres 8.8
Entorhinal gyrus
nTPM: 7.8
2117 Female, age 91, right hemisphere 11.9
2764 Male, age 80, right hemisphere 8.4
2613 Female, age 94, left hemisphere 7.3
2686 Male, age 75, right hemisphere 7.0
1938 Female, age 85, left hemisphere 6.9
1787 Male, age 76, left hemisphere 5.5
Hippocampus, CA1
nTPM: 10.4
2045 Male, age 76, both hemispheres 19.9
1873 Female, age 85, both hemispheres 11.5
2527 Male, age 74, both hemispheres 7.5
2082 Female, age 91, right hemisphere 6.9
2749 Male, age 80, left hemisphere 5.9
Hippocampus, CA2
nTPM: 8.5
1963 Male, age 80, left hemisphere 9.9
2437 Female, age 94, left hemisphere 9.2
2249 Male, age 74, both hemispheres 8.6
1940 Female, age 85, left hemisphere 8.1
1892 Male, age 76, both hemispheres 7.7
2113 Female, age 91, right hemisphere 7.2
Hippocampus, CA3
nTPM: 10.1
2620 Female, age 94, left hemisphere 16.2
1891 Female, age 85, both hemispheres 11.9
2436 Male, age 74, both hemispheres 10.6
1867 Male, age 76, both hemispheres 8.8
2861 Female, age 67, both hemispheres 8.1
2137 Male, age 80, left hemisphere 4.9
Parahippocampal cortex
nTPM: 6.5
2692 Male, age 74, both hemispheres 8.7
1990 Female, age 91, right hemisphere 7.8
2018 Male, age 76, both hemispheres 7.2
2532 Female, age 72, left hemisphere 7.2
1850 Male, age 80, both hemispheres 6.4
1933 Female, age 85, both hemispheres 6.2
2250 Female, age 67, right hemisphere 6.0
2693 Female, age 94, both hemispheres 6.0
2245 Female, age 91, both hemispheres 5.7
2622 Female, age 67, right hemisphere 4.0
Perirhinal gyrus
nTPM: 5.7
2521 Female, age 94, right hemisphere 7.3
1841 Female, age 85, right hemisphere 5.9
1794 Male, age 80, right hemisphere 5.4
1847 Female, age 91, left hemisphere 5.2
2848 Male, age 76, right hemisphere 4.6
Subiculum
nTPM: 9.9
2042 Male, age 76, both hemispheres 13.0
1901 Male, age 80, both hemispheres 10.1
2438 Female, age 94, left hemisphere 9.4
1977 Female, age 85, both hemispheres 9.3
2729 Female, age 91, right hemisphere 9.3
2619 Male, age 74, both hemispheres 8.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.9
Samples: 197

Max nTPM: 27.0
Min nTPM: 2.7
Std nTPM: 4.9
Median nTPM: 9.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 27.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 25.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 25.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 25.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 24.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 22.2
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 21.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 21.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 20.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 20.1
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 19.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 9.5
FF:10169-103B7 60 years, female 10.4
FF:10153-102I9 76 years, female 8.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 9.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 7.3
Samples: 4

Max nTPM: 9.2
Min nTPM: 5.9
Sample A Female 7.2
Sample B Female 7.0
Sample C Male 5.9
Sample D Male 9.2
Entorhinal cortex
nTPM: 4.4
Samples: 4

Max nTPM: 5.1
Min nTPM: 3.9
Sample A Female 4.3
Sample B Female 4.1
Sample C Male 3.9
Sample D Male 5.1
Subiculum
nTPM: 9.8
Samples: 4

Max nTPM: 11.8
Min nTPM: 7.4
Sample A Female 11.8
Sample B Female 10.1
Sample C Male 10.0
Sample D Male 7.4
Ventral hippocampus
nTPM: 6.3
Samples: 4

Max nTPM: 7.9
Min nTPM: 5.4
Sample A Female 6.1
Sample B Female 7.9
Sample C Male 5.7
Sample D Male 5.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 20.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 12.4
Samples: 4

Max nTPM: 14.8
Min nTPM: 10.0
Sample A Male 14.8
Sample B Male 10.0
Sample C Female 13.5
Sample D Female 11.3
Hippocampal formation
nTPM: 20.2
Samples: 4

Max nTPM: 28.3
Min nTPM: 14.3
Sample A Male 14.3
Sample B Male 21.5
Sample C Female 28.3
Sample D Female 16.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
69980304 Antisense, RP_050512_04_C07, Mouse strain C57BL/6J (56 days, male) 0.2

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