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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:100.1 nTPM
HPA:100.1 nTPM
GTEx:87.2 nTPM
FANTOM5:57.9 Scaled Tags Per Million
Pig:5.1 nTPM
Mouse:70.6 nTPM
Allen mouse:2.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA029900
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 100.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 98.1
2481 Female, age 94, left hemisphere 106.8
1857 Female, age 85, left hemisphere 103.5
2290 Female, age 72, unknown 99.1
1854 Male, age 80, left hemisphere 98.7
1781 Male, age 74, unknown 95.6
2289 Male, age 61, right hemisphere 95.2
2846 Female, age 79, unknown 93.9
2288 Male, age 75, left hemisphere 92.3
Claustrum
nTPM: 92.1
2196 Female, age 79, unknown 95.9
2491 Male, age 75, both hemispheres 94.1
1956 Male, age 74, unknown 93.0
2198 Male, age 80, both hemispheres 92.9
2392 Female, age 94, both hemispheres 91.4
2568 Male, age 61, both hemispheres 91.4
2645 Female, age 72, unknown 90.7
2284 Female, age 91, both hemispheres 89.6
2292 Female, age 85, both hemispheres 89.6
Globus pallidus, externus
nTPM: 100.1
1996 Male, age 80, right hemisphere 104.4
2646 Male, age 61, right hemisphere 103.6
2772 Female, age 79, unknown 99.0
2395 Male, age 75, both hemispheres 97.7
2567 Female, age 72, unknown 96.0
Globus pallidus, internus
nTPM: 98.0
2483 Female, age 94, right hemisphere 104.4
2037 Male, age 80, right hemisphere 100.4
2287 Male, age 75, right hemisphere 98.9
2778 Female, age 91, both hemispheres 97.9
2111 Female, age 85, right hemisphere 95.9
1818 Male, age 74, unknown 95.3
2566 Female, age 72, unknown 93.3
Nucleus accumbens
nTPM: 97.5
1806 Female, age 85, left hemisphere 101.3
2391 Female, age 94, left hemisphere 101.1
1856 Female, age 91, right hemisphere 99.7
2286 Male, age 75, left hemisphere 97.9
2824 Male, age 61, right hemisphere 96.6
2698 Female, age 72, unknown 95.7
1783 Male, age 74, unknown 94.6
2732 Male, age 80, right hemisphere 92.7
Nucleus basalis of Meynert
nTPM: 95.8
2569 Male, age 61, both hemispheres 105.0
2393 Male, age 80, right hemisphere 93.7
2484 Female, age 94, left hemisphere 93.6
2821 Male, age 75, both hemispheres 90.8
Nucleus of the diagonal band
nTPM: 94.5
1812 Female, age 91, both hemispheres 97.3
2775 Male, age 80, right hemisphere 96.2
2195 Female, age 85, both hemispheres 94.4
1979 Male, age 74, unknown 93.8
2029 Male, age 61, right hemisphere 90.5
Olfactory tubercle
nTPM: 92.6
1846 Male, age 80, right hemisphere 93.9
1998 Female, age 91, both hemispheres 93.8
2856 Male, age 75, right hemisphere 93.5
2487 Female, age 94, left hemisphere 89.3
Putamen
nTPM: 94.4
2482 Female, age 94, left hemisphere 97.5
2647 Male, age 75, left hemisphere 96.6
1937 Female, age 91, right hemisphere 96.5
2466 Female, age 79, unknown 93.9
1838 Male, age 80, right hemisphere 93.7
1829 Male, age 74, unknown 91.9
2489 Female, age 72, unknown 90.5
Septal nuclei
nTPM: 93.2
2031 Female, age 72, unknown 97.4
1960 Male, age 74, unknown 96.1
2059 Female, age 85, both hemispheres 95.5
2009 Female, age 91, both hemispheres 92.8
2199 Male, age 80, right hemisphere 90.8
2394 Male, age 61, left hemisphere 90.1
2629 Female, age 94, right hemisphere 90.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 87.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 74.1
Samples: 246

Max nTPM: 215.1
Min nTPM: 26.1
Std nTPM: 24.7
Median nTPM: 68.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 215.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 158.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 145.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 139.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 138.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 132.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 131.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 130.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 127.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 126.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 123.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 87.2
Samples: 246

Max nTPM: 353.0
Min nTPM: 24.2
Std nTPM: 37.5
Median nTPM: 77.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 353.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 238.8
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 204.2
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 186.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 185.5
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 185.2
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 179.2
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 177.1
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 174.4
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 173.2
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 172.8
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Brain - Putamen (basal ganglia)
Average nTPM: 69.4
Samples: 205

Max nTPM: 149.0
Min nTPM: 36.2
Std nTPM: 20.3
Median nTPM: 65.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 149.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 144.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 136.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 129.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 128.3
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 115.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 111.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 111.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 111.1
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 111.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 110.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 57.9
FF:10164-103B2 76 years, female 57.9
Globus pallidus
Scaled Tags Per Million: 41.9
FF:10175-103C4 60 years, female 47.3
FF:10161-103A8 76 years, female 36.4
Nucleus accumbens
Scaled Tags Per Million: 36.3
FF:10037-101F1 23-56 years, mixed 36.3
Putamen
Scaled Tags Per Million: 57.8
FF:10176-103C5 60 years, female 57.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.1
Pig sample Sample description nTPM
Caudate
nTPM: 5.0
Samples: 4

Max nTPM: 5.5
Min nTPM: 4.1
Sample A Female 5.0
Sample B Female 5.4
Sample C Male 4.1
Sample D Male 5.5
Putamen
nTPM: 4.8
Samples: 4

Max nTPM: 5.7
Min nTPM: 3.2
Sample A Female 4.8
Sample B Female 5.7
Sample C Male 3.2
Sample D Male 5.3
Septum
nTPM: 4.7
Samples: 4

Max nTPM: 5.5
Min nTPM: 3.9
Sample A Female 4.1
Sample B Female 5.5
Sample C Male 3.9
Sample D Male 5.2
Ventral pallidum
nTPM: 5.1
Samples: 4

Max nTPM: 5.5
Min nTPM: 4.6
Sample A Female 5.2
Sample B Female 5.2
Sample C Male 4.6
Sample D Male 5.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 70.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 59.1
Samples: 4

Max nTPM: 65.0
Min nTPM: 51.9
Sample A Male 51.9
Sample B Male 54.8
Sample C Female 64.5
Sample D Female 65.0
Septum
nTPM: 70.6
Samples: 4

Max nTPM: 78.2
Min nTPM: 66.7
Sample A Male 66.7
Sample B Male 68.1
Sample C Female 78.2
Sample D Female 69.4
Ventral forebrain
nTPM: 65.2
Samples: 4

Max nTPM: 69.5
Min nTPM: 60.7
Sample A Male 60.7
Sample B Male 66.4
Sample C Female 69.5
Sample D Female 64.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.1
68522491 Antisense, RP_050118_02_B07, Mouse strain C57BL/6J (56 days, male) 2.1
Pallidum
Expression energy: 2.8
68522491 Antisense, RP_050118_02_B07, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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