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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:29.9 nTPM
HPA:29.9 nTPM
GTEx:19.6 nTPM
FANTOM5:33.7 Scaled Tags Per Million
Mouse:30.3 nTPM
Allen mouse:2.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA023689
Glial cells Not detected
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 29.9
Sample id Sample description nTPM
Hippocampus
nTPM: 27.0
1898 Male, age 80, left hemisphere 27.5
1855 Male, age 76, left hemisphere 27.3
2621 Female, age 67, right hemisphere 27.3
2529 Female, age 94, left hemisphere 27.0
2148 Female, age 91, left hemisphere 26.4
1911 Female, age 85, right hemisphere 26.3
Dentate gyrus
nTPM: 26.2
2530 Female, age 94, left hemisphere 27.2
2531 Female, age 67, both hemispheres 27.2
2528 Male, age 74, both hemispheres 27.0
1927 Female, age 91, both hemispheres 25.9
2246 Female, age 85, both hemispheres 25.7
2010 Male, age 76, both hemispheres 24.5
Entorhinal gyrus
nTPM: 29.9
2764 Male, age 80, right hemisphere 31.1
2613 Female, age 94, left hemisphere 30.9
1787 Male, age 76, left hemisphere 30.1
2117 Female, age 91, right hemisphere 29.5
1938 Female, age 85, left hemisphere 29.2
2686 Male, age 75, right hemisphere 28.3
Hippocampus, CA1
nTPM: 25.8
2082 Female, age 91, right hemisphere 26.6
2527 Male, age 74, both hemispheres 26.3
1873 Female, age 85, both hemispheres 25.6
2749 Male, age 80, left hemisphere 25.4
2045 Male, age 76, both hemispheres 25.2
Hippocampus, CA2
nTPM: 26.6
1940 Female, age 85, left hemisphere 27.5
2437 Female, age 94, left hemisphere 27.2
2113 Female, age 91, right hemisphere 26.7
1892 Male, age 76, both hemispheres 26.5
2249 Male, age 74, both hemispheres 26.1
1963 Male, age 80, left hemisphere 25.8
Hippocampus, CA3
nTPM: 26.7
2620 Female, age 94, left hemisphere 28.9
2861 Female, age 67, both hemispheres 28.4
1891 Female, age 85, both hemispheres 27.0
1867 Male, age 76, both hemispheres 26.8
2137 Male, age 80, left hemisphere 25.7
2436 Male, age 74, both hemispheres 23.7
Parahippocampal cortex
nTPM: 27.8
2532 Female, age 72, left hemisphere 29.9
1850 Male, age 80, both hemispheres 28.9
2692 Male, age 74, both hemispheres 28.6
1933 Female, age 85, both hemispheres 28.4
2622 Female, age 67, right hemisphere 28.3
1990 Female, age 91, right hemisphere 28.2
2693 Female, age 94, both hemispheres 27.6
2245 Female, age 91, both hemispheres 26.8
2250 Female, age 67, right hemisphere 25.7
2018 Male, age 76, both hemispheres 25.2
Perirhinal gyrus
nTPM: 28.1
1794 Male, age 80, right hemisphere 29.2
1847 Female, age 91, left hemisphere 28.7
2848 Male, age 76, right hemisphere 28.7
1841 Female, age 85, right hemisphere 28.1
2521 Female, age 94, right hemisphere 25.9
Subiculum
nTPM: 27.7
1901 Male, age 80, both hemispheres 28.6
2619 Male, age 74, both hemispheres 28.5
1977 Female, age 85, both hemispheres 27.8
2042 Male, age 76, both hemispheres 27.7
2438 Female, age 94, left hemisphere 26.7
2729 Female, age 91, right hemisphere 26.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 19.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19.6
Samples: 197

Max nTPM: 32.4
Min nTPM: 11.6
Std nTPM: 3.4
Median nTPM: 19.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 32.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 30.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 30.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 28.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 28.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 28.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 27.4
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 27.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 27.2
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 26.8
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 26.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 33.7
FF:10153-102I9 76 years, female 45.4
FF:10169-103B7 60 years, female 21.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 30.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 30.3
Samples: 4

Max nTPM: 34.8
Min nTPM: 28.5
Sample A Male 28.5
Sample B Male 28.7
Sample C Female 29.3
Sample D Female 34.8
Hippocampal formation
nTPM: 28.7
Samples: 4

Max nTPM: 30.5
Min nTPM: 27.1
Sample A Male 27.1
Sample B Male 30.5
Sample C Female 29.7
Sample D Female 27.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.5
68845627 Antisense, RP_050224_02_B10, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.