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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.8 nTPM
HPA:64.8 nTPM
GTEx:84.9 nTPM
FANTOM5:42.8 Scaled Tags Per Million
Pig:13.1 nTPM
Mouse:102.7 nTPM
Allen mouse:8.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.6
2586 Male, age 75, left hemisphere 65.3
2019 Male, age 18, unknown 64.0
2411 Female, age 72, unknown 61.8
1870 Female, age 42, unknown 61.5
1827 Male, age 72, unknown 60.9
2219 Male, age 76, both hemispheres 60.8
2828 Female, age 72, unknown 60.2
1833 Male, age 53, unknown 58.5
1830 Male, age 51, unknown 57.3
2666 Male, age 74, left hemisphere 55.6
Dorsal raphe nucleus
nTPM: 63.6
2298 Female, age 72, unknown 69.9
2016 Female, age 72, unknown 64.8
1828 Male, age 53, unknown 62.6
2750 Male, age 76, both hemispheres 60.4
2047 Male, age 72, unknown 60.2
Inferior colliculus
nTPM: 58.0
1890 Male, age 53, unknown 59.9
2097 Female, age 72, unknown 59.6
1848 Female, age 42, unknown 57.4
2849 Male, age 72, unknown 55.2
Median raphe nucleus
nTPM: 59.3
2220 Male, age 76, midline 59.3
Pedunculopontine tegmental nucleus
nTPM: 58.3
1921 Female, age 85, both hemispheres 59.1
2334 Male, age 80, both hemispheres 59.0
2338 Male, age 61, both hemispheres 56.7
Periaquaductal grey, anterior
nTPM: 62.0
1795 Male, age 51, unknown 64.3
2502 Female, age 75, unknown 61.4
1947 Male, age 18, unknown 60.4
Periaquaductal grey, dorsal
nTPM: 58.6
2850 Male, age 76, both hemispheres 59.7
1840 Male, age 53, unknown 59.2
1831 Male, age 72, unknown 57.9
2464 Female, age 72, unknown 57.6
Periaquaductal grey, lateral
nTPM: 60.8
2272 Male, age 74, both hemispheres 65.5
2053 Male, age 18, unknown 58.9
2140 Male, age 76, both hemispheres 57.9
Pretectal area
nTPM: 61.3
2273 Male, age 74, both hemispheres 68.1
2007 Male, age 72, unknown 64.2
2224 Female, age 72, unknown 62.5
1816 Male, age 51, unknown 61.9
2667 Female, age 75, unknown 61.9
1817 Female, age 42, unknown 61.5
1944 Female, age 72, unknown 61.3
1815 Male, age 53, unknown 60.2
2825 Male, age 18, unknown 58.7
2316 Male, age 76, right hemisphere 57.2
2407 Male, age 75, both hemispheres 57.0
Red nucleus
nTPM: 61.4
2503 Female, age 72, unknown 64.0
1821 Female, age 72, unknown 63.7
1904 Male, age 53, unknown 63.7
1865 Male, age 51, unknown 63.3
1954 Female, age 42, unknown 62.7
2769 Male, age 72, unknown 62.7
2785 Male, age 18, unknown 61.1
2227 Male, age 72, unknown 61.0
2725 Female, age 75, unknown 60.3
2588 Male, age 74, left hemisphere 59.0
2823 Male, age 76, right hemisphere 58.4
2584 Male, age 75, left hemisphere 56.6
Substantia nigra
nTPM: 64.8
1851 Male, age 51, unknown 70.9
1916 Female, age 42, unknown 70.3
2241 Male, age 72, unknown 67.0
2699 Male, age 18, unknown 65.5
1941 Male, age 53, unknown 64.3
2590 Female, age 75, unknown 62.9
1889 Female, age 72, unknown 62.8
2409 Female, age 72, unknown 61.7
2583 Male, age 75, right hemisphere 61.6
2665 Male, age 74, both hemispheres 60.7
Superior colliculus
nTPM: 59.9
2587 Male, age 74, left hemisphere 62.0
2668 Female, age 75, unknown 61.8
1796 Male, age 53, unknown 61.7
2261 Male, age 18, unknown 61.5
2664 Male, age 75, both hemispheres 60.9
1995 Male, age 72, unknown 60.4
2087 Female, age 72, unknown 58.8
1913 Female, age 42, unknown 58.7
1895 Male, age 76, right hemisphere 57.2
1839 Male, age 51, unknown 55.9
Ventral tegmental area
nTPM: 63.5
2410 Female, age 72, unknown 68.6
1915 Female, age 42, unknown 67.0
2218 Male, age 76, both hemispheres 61.9
1942 Male, age 51, unknown 61.8
2223 Female, age 72, unknown 61.6
2021 Male, age 53, unknown 59.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 84.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 84.9
Samples: 139

Max nTPM: 159.8
Min nTPM: 48.1
Std nTPM: 17.8
Median nTPM: 81.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 159.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 133.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 133.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 130.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 129.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 125.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 119.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 117.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 114.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 112.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 111.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.8
FF:10158-103A5 76 years, female 42.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.1
Pig sample Sample description nTPM
Midbrain
nTPM: 12.7
Samples: 4

Max nTPM: 14.7
Min nTPM: 10.8
Sample A Female 13.8
Sample B Female 10.8
Sample C Male 14.7
Sample D Male 11.6
Periaqueductal gray
nTPM: 10.5
Samples: 3

Max nTPM: 12.3
Min nTPM: 9.4
Sample B Female 9.8
Sample C Male 12.3
Sample D Male 9.4
Substantia nigra
nTPM: 11.8
Samples: 4

Max nTPM: 16.1
Min nTPM: 8.7
Sample A Female 16.1
Sample B Female 9.7
Sample C Male 12.8
Sample D Male 8.7
Superior colliculi
nTPM: 13.2
Samples: 4

Max nTPM: 15.7
Min nTPM: 10.0
Sample A Female 15.7
Sample B Female 10.0
Sample C Male 15.4
Sample D Male 11.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 102.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 102.7
Samples: 4

Max nTPM: 112.7
Min nTPM: 96.2
Sample A Male 112.7
Sample B Male 98.2
Sample C Female 96.2
Sample D Female 103.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.2
68862156 Antisense, RP_050301_01_F06, Mouse strain C57BL/6J (56 days, male) 8.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.