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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:20.6 nTPM
HPA:20.6 nTPM
GTEx:13.5 nTPM
FANTOM5:47.8 Scaled Tags Per Million
Pig:47.6 nTPM
Mouse:26.4 nTPM
Allen mouse:2.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA035251Antibody HPA040815
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 20.6
Sample id Sample description nTPM
Hippocampus
nTPM: 18.9
2529 Female, age 94, left hemisphere 23.8
1911 Female, age 85, right hemisphere 20.0
1898 Male, age 80, left hemisphere 19.0
2148 Female, age 91, left hemisphere 18.0
1855 Male, age 76, left hemisphere 16.4
2621 Female, age 67, right hemisphere 15.8
Dentate gyrus
nTPM: 17.6
2530 Female, age 94, left hemisphere 23.2
2528 Male, age 74, both hemispheres 21.6
2010 Male, age 76, both hemispheres 16.9
2246 Female, age 85, both hemispheres 15.5
1927 Female, age 91, both hemispheres 14.9
2531 Female, age 67, both hemispheres 13.3
Entorhinal gyrus
nTPM: 15.0
2117 Female, age 91, right hemisphere 22.2
2686 Male, age 75, right hemisphere 17.6
1787 Male, age 76, left hemisphere 15.8
1938 Female, age 85, left hemisphere 13.0
2764 Male, age 80, right hemisphere 12.0
2613 Female, age 94, left hemisphere 9.5
Hippocampus, CA1
nTPM: 16.2
2082 Female, age 91, right hemisphere 19.6
2527 Male, age 74, both hemispheres 19.6
1873 Female, age 85, both hemispheres 15.7
2749 Male, age 80, left hemisphere 15.6
2045 Male, age 76, both hemispheres 10.7
Hippocampus, CA2
nTPM: 19.3
2249 Male, age 74, both hemispheres 29.4
1940 Female, age 85, left hemisphere 21.9
2113 Female, age 91, right hemisphere 18.9
2437 Female, age 94, left hemisphere 17.7
1963 Male, age 80, left hemisphere 17.1
1892 Male, age 76, both hemispheres 10.8
Hippocampus, CA3
nTPM: 20.6
2436 Male, age 74, both hemispheres 42.4
2620 Female, age 94, left hemisphere 17.5
1891 Female, age 85, both hemispheres 17.4
2137 Male, age 80, left hemisphere 15.7
2861 Female, age 67, both hemispheres 15.5
1867 Male, age 76, both hemispheres 15.3
Parahippocampal cortex
nTPM: 15.0
2692 Male, age 74, both hemispheres 18.4
2018 Male, age 76, both hemispheres 17.0
2250 Female, age 67, right hemisphere 16.8
1990 Female, age 91, right hemisphere 15.8
2622 Female, age 67, right hemisphere 15.3
1933 Female, age 85, both hemispheres 14.7
2245 Female, age 91, both hemispheres 14.2
2693 Female, age 94, both hemispheres 12.9
1850 Male, age 80, both hemispheres 12.6
2532 Female, age 72, left hemisphere 12.3
Perirhinal gyrus
nTPM: 12.9
2521 Female, age 94, right hemisphere 14.5
1841 Female, age 85, right hemisphere 13.6
1794 Male, age 80, right hemisphere 12.8
1847 Female, age 91, left hemisphere 12.1
2848 Male, age 76, right hemisphere 11.6
Subiculum
nTPM: 17.0
2729 Female, age 91, right hemisphere 20.6
2619 Male, age 74, both hemispheres 19.4
2042 Male, age 76, both hemispheres 18.2
2438 Female, age 94, left hemisphere 16.0
1901 Male, age 80, both hemispheres 15.9
1977 Female, age 85, both hemispheres 11.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.5
Samples: 197

Max nTPM: 60.4
Min nTPM: 4.1
Std nTPM: 6.9
Median nTPM: 11.8
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 60.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 36.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 36.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 34.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 32.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 32.1
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 30.3
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 29.5
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 27.1
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 26.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 25.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 47.8
FF:10169-103B7 60 years, female 52.3
FF:10153-102I9 76 years, female 43.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 47.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 47.6
Samples: 4

Max nTPM: 55.5
Min nTPM: 24.3
Sample A Female 55.2
Sample B Female 55.4
Sample C Male 55.5
Sample D Male 24.3
Entorhinal cortex
nTPM: 28.1
Samples: 4

Max nTPM: 34.3
Min nTPM: 24.1
Sample A Female 28.7
Sample B Female 34.3
Sample C Male 25.2
Sample D Male 24.1
Subiculum
nTPM: 31.4
Samples: 4

Max nTPM: 41.3
Min nTPM: 26.0
Sample A Female 28.0
Sample B Female 26.0
Sample C Male 41.3
Sample D Male 30.4
Ventral hippocampus
nTPM: 47.0
Samples: 4

Max nTPM: 87.3
Min nTPM: 29.6
Sample A Female 30.6
Sample B Female 29.6
Sample C Male 40.5
Sample D Male 87.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 26.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.4
Samples: 4

Max nTPM: 30.5
Min nTPM: 22.2
Sample A Male 22.2
Sample B Male 23.6
Sample C Female 30.5
Sample D Female 29.4
Hippocampal formation
nTPM: 22.1
Samples: 4

Max nTPM: 25.5
Min nTPM: 18.8
Sample A Male 25.0
Sample B Male 19.0
Sample C Female 18.8
Sample D Female 25.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.6
71016596 Antisense, RP_050725_03_A06, Mouse strain C57BL/6J (56 days, male) 3.0
68633050 Antisense, RP_050125_02_C12, Mouse strain C57BL/6J (56 days, male) 2.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.