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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:114.7 nTPM
HPA:114.7 nTPM
GTEx:109.1 nTPM
FANTOM5:125.3 Scaled Tags Per Million
Pig:96.6 nTPM
Mouse:150.4 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 114.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.8
1870 Female, age 42, unknown 110.6
2666 Male, age 74, left hemisphere 108.7
1827 Male, age 72, unknown 106.7
2219 Male, age 76, both hemispheres 106.4
2828 Female, age 72, unknown 105.3
1830 Male, age 51, unknown 105.0
1833 Male, age 53, unknown 104.8
2411 Female, age 72, unknown 104.3
2019 Male, age 18, unknown 102.9
2586 Male, age 75, left hemisphere 102.8
Dorsal raphe nucleus
nTPM: 109.8
2298 Female, age 72, unknown 115.7
1828 Male, age 53, unknown 110.5
2750 Male, age 76, both hemispheres 108.0
2047 Male, age 72, unknown 107.6
2016 Female, age 72, unknown 107.0
Inferior colliculus
nTPM: 107.6
2097 Female, age 72, unknown 110.4
1848 Female, age 42, unknown 107.4
2849 Male, age 72, unknown 107.0
1890 Male, age 53, unknown 105.7
Median raphe nucleus
nTPM: 112.8
2220 Male, age 76, midline 112.8
Pedunculopontine tegmental nucleus
nTPM: 114.7
2338 Male, age 61, both hemispheres 123.5
2334 Male, age 80, both hemispheres 113.1
1921 Female, age 85, both hemispheres 107.4
Periaquaductal grey, anterior
nTPM: 108.2
2502 Female, age 75, unknown 108.5
1947 Male, age 18, unknown 108.3
1795 Male, age 51, unknown 107.7
Periaquaductal grey, dorsal
nTPM: 105.5
1840 Male, age 53, unknown 110.1
2850 Male, age 76, both hemispheres 106.5
1831 Male, age 72, unknown 104.5
2464 Female, age 72, unknown 101.1
Periaquaductal grey, lateral
nTPM: 105.4
2272 Male, age 74, both hemispheres 108.8
2053 Male, age 18, unknown 105.4
2140 Male, age 76, both hemispheres 101.9
Pretectal area
nTPM: 107.7
1817 Female, age 42, unknown 110.7
2825 Male, age 18, unknown 110.5
1816 Male, age 51, unknown 110.2
2224 Female, age 72, unknown 109.9
1944 Female, age 72, unknown 109.7
2007 Male, age 72, unknown 107.1
1815 Male, age 53, unknown 107.0
2273 Male, age 74, both hemispheres 107.0
2667 Female, age 75, unknown 104.8
2316 Male, age 76, right hemisphere 103.8
2407 Male, age 75, both hemispheres 103.8
Red nucleus
nTPM: 104.8
1821 Female, age 72, unknown 113.1
2725 Female, age 75, unknown 112.0
2503 Female, age 72, unknown 107.3
1954 Female, age 42, unknown 105.8
2769 Male, age 72, unknown 104.9
1865 Male, age 51, unknown 104.2
2227 Male, age 72, unknown 103.7
1904 Male, age 53, unknown 102.8
2785 Male, age 18, unknown 102.2
2823 Male, age 76, right hemisphere 102.2
2584 Male, age 75, left hemisphere 101.5
2588 Male, age 74, left hemisphere 98.4
Substantia nigra
nTPM: 113.5
1916 Female, age 42, unknown 122.3
2241 Male, age 72, unknown 121.8
1851 Male, age 51, unknown 118.3
2699 Male, age 18, unknown 114.9
2665 Male, age 74, both hemispheres 114.8
1941 Male, age 53, unknown 111.2
1889 Female, age 72, unknown 110.4
2583 Male, age 75, right hemisphere 108.1
2590 Female, age 75, unknown 107.1
2409 Female, age 72, unknown 106.4
Superior colliculus
nTPM: 105.4
2587 Male, age 74, left hemisphere 110.9
1796 Male, age 53, unknown 107.8
2261 Male, age 18, unknown 106.2
2668 Female, age 75, unknown 106.1
1839 Male, age 51, unknown 105.4
2087 Female, age 72, unknown 104.3
1895 Male, age 76, right hemisphere 104.2
1913 Female, age 42, unknown 103.1
2664 Male, age 75, both hemispheres 102.9
1995 Male, age 72, unknown 102.6
Ventral tegmental area
nTPM: 112.2
1915 Female, age 42, unknown 117.6
2223 Female, age 72, unknown 114.0
2218 Male, age 76, both hemispheres 112.8
2410 Female, age 72, unknown 111.7
2021 Male, age 53, unknown 110.7
1942 Male, age 51, unknown 106.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 109.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 109.1
Samples: 139

Max nTPM: 204.1
Min nTPM: 72.9
Std nTPM: 20.7
Median nTPM: 107.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 204.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 184.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 157.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 155.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 151.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 149.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 143.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 142.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 140.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 135.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 134.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.3
FF:10158-103A5 76 years, female 125.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 96.6
Pig sample Sample description nTPM
Midbrain
nTPM: 90.4
Samples: 4

Max nTPM: 119.1
Min nTPM: 70.2
Sample A Female 119.1
Sample B Female 94.9
Sample C Male 70.2
Sample D Male 77.2
Periaqueductal gray
nTPM: 82.4
Samples: 3

Max nTPM: 91.3
Min nTPM: 77.2
Sample B Female 78.8
Sample C Male 91.3
Sample D Male 77.2
Substantia nigra
nTPM: 96.7
Samples: 4

Max nTPM: 113.5
Min nTPM: 78.2
Sample A Female 113.5
Sample B Female 96.3
Sample C Male 98.6
Sample D Male 78.2
Superior colliculi
nTPM: 85.3
Samples: 4

Max nTPM: 104.2
Min nTPM: 74.8
Sample A Female 104.2
Sample B Female 76.7
Sample C Male 74.8
Sample D Male 85.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 150.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 150.4
Samples: 4

Max nTPM: 152.8
Min nTPM: 148.7
Sample A Male 150.1
Sample B Male 148.7
Sample C Female 152.8
Sample D Female 150.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
69526892 Antisense, RP_050421_01_H01, Mouse strain C57BL/6J (56 days, male) 4.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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