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PSMD6
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:46.2 nTPM
HPA:46.2 nTPM
GTEx:40.1 nTPM
FANTOM5:82.3 Scaled Tags Per Million
Pig:29.2 nTPM
Mouse:104.9 nTPM
Allen mouse:6.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA036921Antibody HPA036922
Glial cells LowLow
Neuronal cells HighHigh



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 46.2
Sample id Sample description nTPM
Hippocampus
nTPM: 44.6
1898 Male, age 80, left hemisphere 49.2
1855 Male, age 76, left hemisphere 45.0
2621 Female, age 67, right hemisphere 44.4
2529 Female, age 94, left hemisphere 43.3
2148 Female, age 91, left hemisphere 42.9
1911 Female, age 85, right hemisphere 42.7
Dentate gyrus
nTPM: 43.6
2010 Male, age 76, both hemispheres 46.0
1927 Female, age 91, both hemispheres 45.4
2528 Male, age 74, both hemispheres 45.0
2246 Female, age 85, both hemispheres 43.4
2530 Female, age 94, left hemisphere 41.9
2531 Female, age 67, both hemispheres 40.2
Entorhinal gyrus
nTPM: 42.8
1938 Female, age 85, left hemisphere 44.9
2764 Male, age 80, right hemisphere 44.1
2117 Female, age 91, right hemisphere 43.6
1787 Male, age 76, left hemisphere 43.2
2686 Male, age 75, right hemisphere 40.5
2613 Female, age 94, left hemisphere 40.4
Hippocampus, CA1
nTPM: 46.2
2749 Male, age 80, left hemisphere 54.4
1873 Female, age 85, both hemispheres 45.2
2527 Male, age 74, both hemispheres 45.1
2045 Male, age 76, both hemispheres 43.5
2082 Female, age 91, right hemisphere 42.9
Hippocampus, CA2
nTPM: 44.8
1963 Male, age 80, left hemisphere 47.3
1892 Male, age 76, both hemispheres 47.0
2249 Male, age 74, both hemispheres 46.5
1940 Female, age 85, left hemisphere 43.2
2113 Female, age 91, right hemisphere 42.8
2437 Female, age 94, left hemisphere 42.0
Hippocampus, CA3
nTPM: 44.6
2137 Male, age 80, left hemisphere 50.9
1867 Male, age 76, both hemispheres 47.8
2436 Male, age 74, both hemispheres 45.7
1891 Female, age 85, both hemispheres 43.3
2620 Female, age 94, left hemisphere 41.0
2861 Female, age 67, both hemispheres 38.8
Parahippocampal cortex
nTPM: 43.7
1850 Male, age 80, both hemispheres 46.4
1990 Female, age 91, right hemisphere 45.0
1933 Female, age 85, both hemispheres 44.8
2250 Female, age 67, right hemisphere 44.7
2018 Male, age 76, both hemispheres 44.4
2245 Female, age 91, both hemispheres 44.2
2693 Female, age 94, both hemispheres 43.9
2532 Female, age 72, left hemisphere 43.8
2692 Male, age 74, both hemispheres 40.4
2622 Female, age 67, right hemisphere 39.6
Perirhinal gyrus
nTPM: 45.4
1847 Female, age 91, left hemisphere 47.9
1794 Male, age 80, right hemisphere 46.4
1841 Female, age 85, right hemisphere 46.2
2521 Female, age 94, right hemisphere 44.3
2848 Male, age 76, right hemisphere 42.2
Subiculum
nTPM: 43.0
1901 Male, age 80, both hemispheres 45.6
1977 Female, age 85, both hemispheres 44.6
2729 Female, age 91, right hemisphere 42.8
2042 Male, age 76, both hemispheres 41.9
2438 Female, age 94, left hemisphere 41.9
2619 Male, age 74, both hemispheres 41.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 40.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 40.1
Samples: 197

Max nTPM: 78.5
Min nTPM: 26.3
Std nTPM: 8.2
Median nTPM: 38.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 78.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 73.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 71.9
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 64.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 60.0
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 59.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 55.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 55.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 55.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 55.2
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 54.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 82.3
FF:10169-103B7 60 years, female 99.4
FF:10153-102I9 76 years, female 65.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 29.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 29.2
Samples: 4

Max nTPM: 37.1
Min nTPM: 24.3
Sample A Female 37.1
Sample B Female 30.2
Sample C Male 25.1
Sample D Male 24.3
Entorhinal cortex
nTPM: 21.4
Samples: 4

Max nTPM: 24.9
Min nTPM: 18.2
Sample A Female 22.7
Sample B Female 24.9
Sample C Male 19.8
Sample D Male 18.2
Subiculum
nTPM: 23.0
Samples: 4

Max nTPM: 27.6
Min nTPM: 20.9
Sample A Female 27.6
Sample B Female 20.9
Sample C Male 21.4
Sample D Male 22.1
Ventral hippocampus
nTPM: 25.9
Samples: 4

Max nTPM: 32.2
Min nTPM: 19.3
Sample A Female 26.0
Sample B Female 19.3
Sample C Male 26.0
Sample D Male 32.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 104.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 86.3
Samples: 4

Max nTPM: 96.5
Min nTPM: 79.3
Sample A Male 79.3
Sample B Male 88.1
Sample C Female 96.5
Sample D Female 81.2
Hippocampal formation
nTPM: 105.0
Samples: 4

Max nTPM: 120.8
Min nTPM: 95.9
Sample A Male 120.8
Sample B Male 102.0
Sample C Female 101.1
Sample D Female 95.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.1
68269288 Antisense, RP_041129_01_E07, Mouse strain C57BL/6J (56 days, male) 6.1

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