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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.0 nTPM
HPA:63.0 nTPM
GTEx:36.8 nTPM
FANTOM5:62.3 Scaled Tags Per Million
Pig:26.4 nTPM
Mouse:30.8 nTPM
Allen mouse:8.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.8
2019 Male, age 18, unknown 65.9
2219 Male, age 76, both hemispheres 61.1
1827 Male, age 72, unknown 60.2
2586 Male, age 75, left hemisphere 59.6
2666 Male, age 74, left hemisphere 59.3
2411 Female, age 72, unknown 59.1
1830 Male, age 51, unknown 58.4
1833 Male, age 53, unknown 58.4
2828 Female, age 72, unknown 58.0
1870 Female, age 42, unknown 57.7
Dorsal raphe nucleus
nTPM: 59.5
2047 Male, age 72, unknown 61.9
1828 Male, age 53, unknown 60.8
2298 Female, age 72, unknown 60.2
2750 Male, age 76, both hemispheres 59.3
2016 Female, age 72, unknown 55.3
Inferior colliculus
nTPM: 59.3
2849 Male, age 72, unknown 59.6
1890 Male, age 53, unknown 59.4
2097 Female, age 72, unknown 59.4
1848 Female, age 42, unknown 58.7
Median raphe nucleus
nTPM: 62.7
2220 Male, age 76, midline 62.7
Pedunculopontine tegmental nucleus
nTPM: 61.8
2334 Male, age 80, both hemispheres 63.3
1921 Female, age 85, both hemispheres 62.2
2338 Male, age 61, both hemispheres 59.9
Periaquaductal grey, anterior
nTPM: 59.5
1947 Male, age 18, unknown 60.4
1795 Male, age 51, unknown 59.7
2502 Female, age 75, unknown 58.4
Periaquaductal grey, dorsal
nTPM: 57.8
2464 Female, age 72, unknown 58.8
2850 Male, age 76, both hemispheres 58.1
1840 Male, age 53, unknown 57.9
1831 Male, age 72, unknown 56.3
Periaquaductal grey, lateral
nTPM: 57.3
2272 Male, age 74, both hemispheres 58.3
2140 Male, age 76, both hemispheres 57.5
2053 Male, age 18, unknown 56.0
Pretectal area
nTPM: 63.0
2007 Male, age 72, unknown 69.3
1817 Female, age 42, unknown 67.9
1816 Male, age 51, unknown 66.0
2667 Female, age 75, unknown 64.5
1944 Female, age 72, unknown 64.2
1815 Male, age 53, unknown 63.2
2407 Male, age 75, both hemispheres 63.1
2224 Female, age 72, unknown 60.4
2273 Male, age 74, both hemispheres 58.1
2825 Male, age 18, unknown 58.1
2316 Male, age 76, right hemisphere 57.9
Red nucleus
nTPM: 59.3
2785 Male, age 18, unknown 63.6
2584 Male, age 75, left hemisphere 61.4
2588 Male, age 74, left hemisphere 61.1
2725 Female, age 75, unknown 60.2
1821 Female, age 72, unknown 59.7
1954 Female, age 42, unknown 58.6
1865 Male, age 51, unknown 58.2
2227 Male, age 72, unknown 58.2
2823 Male, age 76, right hemisphere 58.1
2769 Male, age 72, unknown 57.9
1904 Male, age 53, unknown 57.5
2503 Female, age 72, unknown 57.2
Substantia nigra
nTPM: 59.6
1916 Female, age 42, unknown 62.1
1889 Female, age 72, unknown 61.8
1941 Male, age 53, unknown 61.2
1851 Male, age 51, unknown 61.1
2583 Male, age 75, right hemisphere 60.8
2665 Male, age 74, both hemispheres 59.7
2409 Female, age 72, unknown 58.5
2590 Female, age 75, unknown 58.0
2241 Male, age 72, unknown 57.5
2699 Male, age 18, unknown 55.6
Superior colliculus
nTPM: 59.1
2087 Female, age 72, unknown 63.4
1895 Male, age 76, right hemisphere 60.5
1796 Male, age 53, unknown 60.0
2261 Male, age 18, unknown 59.2
2668 Female, age 75, unknown 59.1
2587 Male, age 74, left hemisphere 58.7
2664 Male, age 75, both hemispheres 58.7
1839 Male, age 51, unknown 58.3
1995 Male, age 72, unknown 57.3
1913 Female, age 42, unknown 56.0
Ventral tegmental area
nTPM: 58.9
1915 Female, age 42, unknown 60.0
2410 Female, age 72, unknown 60.0
2218 Male, age 76, both hemispheres 59.8
2223 Female, age 72, unknown 58.9
1942 Male, age 51, unknown 57.7
2021 Male, age 53, unknown 57.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.8
Samples: 139

Max nTPM: 102.8
Min nTPM: 9.9
Std nTPM: 15.5
Median nTPM: 34.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 102.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 94.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 90.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 86.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 81.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 78.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 70.6
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 70.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 64.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 61.3
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 60.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.3
FF:10158-103A5 76 years, female 62.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.4
Pig sample Sample description nTPM
Midbrain
nTPM: 23.7
Samples: 4

Max nTPM: 32.5
Min nTPM: 13.8
Sample A Female 13.8
Sample B Female 19.9
Sample C Male 32.5
Sample D Male 28.7
Periaqueductal gray
nTPM: 21.6
Samples: 3

Max nTPM: 27.7
Min nTPM: 17.9
Sample B Female 17.9
Sample C Male 27.7
Sample D Male 19.2
Substantia nigra
nTPM: 22.9
Samples: 4

Max nTPM: 31.3
Min nTPM: 12.3
Sample A Female 30.2
Sample B Female 17.8
Sample C Male 31.3
Sample D Male 12.3
Superior colliculi
nTPM: 26.4
Samples: 4

Max nTPM: 30.5
Min nTPM: 19.6
Sample A Female 30.5
Sample B Female 19.6
Sample C Male 29.4
Sample D Male 26.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.8
Samples: 4

Max nTPM: 32.3
Min nTPM: 28.9
Sample A Male 29.8
Sample B Male 28.9
Sample C Female 32.3
Sample D Female 32.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.9
69059968 Antisense, RP_050317_04_H01, Mouse strain C57BL/6J (56 days, male) 8.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.