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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:13.9 nTPM
HPA:13.9 nTPM
GTEx:11.6 nTPM
FANTOM5:44.9 Scaled Tags Per Million
Pig:17.3 nTPM
Mouse:23.0 nTPM
Allen mouse:12.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA029247Antibody HPA029248
Glial cells MediumLow
Neuronal cells LowHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 13.9
Sample id Sample description nTPM
Hippocampus
nTPM: 12.1
2148 Female, age 91, left hemisphere 12.7
2529 Female, age 94, left hemisphere 12.4
1898 Male, age 80, left hemisphere 12.2
1911 Female, age 85, right hemisphere 12.2
1855 Male, age 76, left hemisphere 11.8
2621 Female, age 67, right hemisphere 11.4
Dentate gyrus
nTPM: 12.6
1927 Female, age 91, both hemispheres 13.9
2530 Female, age 94, left hemisphere 13.1
2531 Female, age 67, both hemispheres 12.9
2528 Male, age 74, both hemispheres 12.1
2246 Female, age 85, both hemispheres 11.9
2010 Male, age 76, both hemispheres 11.8
Entorhinal gyrus
nTPM: 13.5
2613 Female, age 94, left hemisphere 14.4
1938 Female, age 85, left hemisphere 13.6
2764 Male, age 80, right hemisphere 13.4
1787 Male, age 76, left hemisphere 13.3
2686 Male, age 75, right hemisphere 13.3
2117 Female, age 91, right hemisphere 12.8
Hippocampus, CA1
nTPM: 12.5
2749 Male, age 80, left hemisphere 14.8
2527 Male, age 74, both hemispheres 12.7
1873 Female, age 85, both hemispheres 11.9
2082 Female, age 91, right hemisphere 11.7
2045 Male, age 76, both hemispheres 11.5
Hippocampus, CA2
nTPM: 12.4
2437 Female, age 94, left hemisphere 13.4
2113 Female, age 91, right hemisphere 12.7
1940 Female, age 85, left hemisphere 12.3
1892 Male, age 76, both hemispheres 12.1
1963 Male, age 80, left hemisphere 12.1
2249 Male, age 74, both hemispheres 11.7
Hippocampus, CA3
nTPM: 12.6
2137 Male, age 80, left hemisphere 15.1
1891 Female, age 85, both hemispheres 13.1
2620 Female, age 94, left hemisphere 13.0
2436 Male, age 74, both hemispheres 11.6
2861 Female, age 67, both hemispheres 11.6
1867 Male, age 76, both hemispheres 11.4
Parahippocampal cortex
nTPM: 13.2
2692 Male, age 74, both hemispheres 14.4
1850 Male, age 80, both hemispheres 14.3
2693 Female, age 94, both hemispheres 14.1
1990 Female, age 91, right hemisphere 13.4
2245 Female, age 91, both hemispheres 13.2
2532 Female, age 72, left hemisphere 13.0
2250 Female, age 67, right hemisphere 12.9
1933 Female, age 85, both hemispheres 12.7
2018 Male, age 76, both hemispheres 11.8
2622 Female, age 67, right hemisphere 11.8
Perirhinal gyrus
nTPM: 13.9
1841 Female, age 85, right hemisphere 15.2
2521 Female, age 94, right hemisphere 14.4
1847 Female, age 91, left hemisphere 13.6
1794 Male, age 80, right hemisphere 13.2
2848 Male, age 76, right hemisphere 13.0
Subiculum
nTPM: 13.0
2438 Female, age 94, left hemisphere 15.5
1901 Male, age 80, both hemispheres 13.6
1977 Female, age 85, both hemispheres 13.1
2042 Male, age 76, both hemispheres 12.1
2619 Male, age 74, both hemispheres 12.0
2729 Female, age 91, right hemisphere 11.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 11.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.6
Samples: 197

Max nTPM: 17.0
Min nTPM: 5.1
Std nTPM: 1.7
Median nTPM: 11.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 17.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 16.3
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 16.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 16.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 15.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 15.1
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 14.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 14.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 14.8
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 14.6
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 14.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 44.9
FF:10169-103B7 60 years, female 57.5
FF:10153-102I9 76 years, female 32.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 17.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 15.7
Samples: 4

Max nTPM: 16.6
Min nTPM: 13.9
Sample A Female 16.6
Sample B Female 16.5
Sample C Male 15.7
Sample D Male 13.9
Entorhinal cortex
nTPM: 17.3
Samples: 4

Max nTPM: 18.3
Min nTPM: 16.3
Sample A Female 17.7
Sample B Female 18.3
Sample C Male 16.8
Sample D Male 16.3
Subiculum
nTPM: 17.0
Samples: 4

Max nTPM: 19.2
Min nTPM: 16.0
Sample A Female 19.2
Sample B Female 16.4
Sample C Male 16.0
Sample D Male 16.2
Ventral hippocampus
nTPM: 14.7
Samples: 4

Max nTPM: 16.9
Min nTPM: 13.2
Sample A Female 14.5
Sample B Female 14.0
Sample C Male 13.2
Sample D Male 16.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 23.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 23.0
Samples: 4

Max nTPM: 24.5
Min nTPM: 20.6
Sample A Male 23.3
Sample B Male 24.5
Sample C Female 20.6
Sample D Female 23.6
Hippocampal formation
nTPM: 20.8
Samples: 4

Max nTPM: 22.8
Min nTPM: 18.2
Sample A Male 21.4
Sample B Male 20.8
Sample C Female 22.8
Sample D Female 18.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 12.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.7
276274 Antisense, RP_040609_01_D07, Mouse strain C57BL/6J (56 days, male) 12.7
227749 Antisense, RP_040609_01_D07, Mouse strain C57BL/6J (56 days, male) 11.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.