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SHISA5
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.6 nTPM
HPA:73.6 nTPM
GTEx:62.3 nTPM
FANTOM5:61.5 Scaled Tags Per Million
Pig:42.2 nTPM
Mouse:49.1 nTPM
Allen mouse:4.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 73.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.3
2586 Male, age 75, left hemisphere 75.8
2666 Male, age 74, left hemisphere 75.6
2828 Female, age 72, unknown 69.1
1827 Male, age 72, unknown 68.5
1833 Male, age 53, unknown 66.7
2411 Female, age 72, unknown 65.2
1870 Female, age 42, unknown 65.1
1830 Male, age 51, unknown 62.3
2019 Male, age 18, unknown 57.5
2219 Male, age 76, both hemispheres 57.5
Dorsal raphe nucleus
nTPM: 67.8
2047 Male, age 72, unknown 70.9
1828 Male, age 53, unknown 69.5
2298 Female, age 72, unknown 67.2
2016 Female, age 72, unknown 66.3
2750 Male, age 76, both hemispheres 65.3
Inferior colliculus
nTPM: 65.3
2849 Male, age 72, unknown 72.3
1848 Female, age 42, unknown 65.8
2097 Female, age 72, unknown 62.2
1890 Male, age 53, unknown 60.9
Median raphe nucleus
nTPM: 67.3
2220 Male, age 76, midline 67.3
Pedunculopontine tegmental nucleus
nTPM: 65.7
2334 Male, age 80, both hemispheres 69.8
2338 Male, age 61, both hemispheres 68.9
1921 Female, age 85, both hemispheres 58.4
Periaquaductal grey, anterior
nTPM: 73.6
1947 Male, age 18, unknown 77.9
1795 Male, age 51, unknown 75.2
2502 Female, age 75, unknown 67.7
Periaquaductal grey, dorsal
nTPM: 68.7
2850 Male, age 76, both hemispheres 76.6
1840 Male, age 53, unknown 70.9
1831 Male, age 72, unknown 63.8
2464 Female, age 72, unknown 63.6
Periaquaductal grey, lateral
nTPM: 68.4
2140 Male, age 76, both hemispheres 72.5
2272 Male, age 74, both hemispheres 66.7
2053 Male, age 18, unknown 65.9
Pretectal area
nTPM: 66.1
2825 Male, age 18, unknown 73.4
1816 Male, age 51, unknown 68.4
1817 Female, age 42, unknown 66.7
1944 Female, age 72, unknown 66.3
2224 Female, age 72, unknown 66.2
1815 Male, age 53, unknown 65.9
2407 Male, age 75, both hemispheres 65.1
2316 Male, age 76, right hemisphere 65.0
2667 Female, age 75, unknown 64.5
2007 Male, age 72, unknown 63.8
2273 Male, age 74, both hemispheres 61.8
Red nucleus
nTPM: 64.6
2584 Male, age 75, left hemisphere 73.4
2725 Female, age 75, unknown 69.8
2823 Male, age 76, right hemisphere 65.7
2588 Male, age 74, left hemisphere 65.1
1954 Female, age 42, unknown 65.0
2769 Male, age 72, unknown 64.3
2227 Male, age 72, unknown 63.3
1821 Female, age 72, unknown 62.8
1904 Male, age 53, unknown 61.7
2503 Female, age 72, unknown 61.7
2785 Male, age 18, unknown 61.6
1865 Male, age 51, unknown 60.9
Substantia nigra
nTPM: 66.7
1916 Female, age 42, unknown 74.5
2583 Male, age 75, right hemisphere 71.6
2665 Male, age 74, both hemispheres 70.3
1851 Male, age 51, unknown 67.9
2590 Female, age 75, unknown 66.9
2699 Male, age 18, unknown 66.9
1941 Male, age 53, unknown 64.2
2241 Male, age 72, unknown 64.1
1889 Female, age 72, unknown 63.4
2409 Female, age 72, unknown 56.9
Superior colliculus
nTPM: 66.3
2261 Male, age 18, unknown 70.6
2664 Male, age 75, both hemispheres 70.2
1796 Male, age 53, unknown 70.0
1839 Male, age 51, unknown 68.1
2668 Female, age 75, unknown 66.8
2087 Female, age 72, unknown 65.8
2587 Male, age 74, left hemisphere 64.6
1995 Male, age 72, unknown 64.2
1895 Male, age 76, right hemisphere 61.1
1913 Female, age 42, unknown 61.1
Ventral tegmental area
nTPM: 66.7
1915 Female, age 42, unknown 68.1
2021 Male, age 53, unknown 68.1
1942 Male, age 51, unknown 67.0
2223 Female, age 72, unknown 66.5
2410 Female, age 72, unknown 65.3
2218 Male, age 76, both hemispheres 65.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.3
Samples: 139

Max nTPM: 112.3
Min nTPM: 35.9
Std nTPM: 13.6
Median nTPM: 61.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 112.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 109.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 109.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 105.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 96.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 92.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 84.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 81.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 79.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 79.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 78.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.5
FF:10158-103A5 76 years, female 61.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.2
Pig sample Sample description nTPM
Midbrain
nTPM: 42.0
Samples: 4

Max nTPM: 54.5
Min nTPM: 32.8
Sample A Female 42.7
Sample B Female 32.8
Sample C Male 54.5
Sample D Male 37.8
Periaqueductal gray
nTPM: 35.5
Samples: 3

Max nTPM: 43.0
Min nTPM: 30.5
Sample B Female 33.0
Sample C Male 43.0
Sample D Male 30.5
Substantia nigra
nTPM: 42.2
Samples: 4

Max nTPM: 51.6
Min nTPM: 33.2
Sample A Female 51.6
Sample B Female 38.3
Sample C Male 45.6
Sample D Male 33.2
Superior colliculi
nTPM: 42.0
Samples: 4

Max nTPM: 49.0
Min nTPM: 36.1
Sample A Female 49.0
Sample B Female 36.1
Sample C Male 44.6
Sample D Male 38.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 49.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.1
Samples: 4

Max nTPM: 51.0
Min nTPM: 47.4
Sample A Male 51.0
Sample B Male 48.3
Sample C Female 49.8
Sample D Female 47.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
512998 Antisense, RP_040809_02_G07, Mouse strain C57BL/6J (56 days, male) 7.1
81599650 Antisense, RP_071213_01_A06, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.