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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.4 nTPM
HPA:21.4 nTPM
GTEx:7.9 nTPM
FANTOM5:45.9 Scaled Tags Per Million
Pig:13.3 nTPM
Mouse:37.9 nTPM
Allen mouse:0.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 18.3
1857 Female, age 85, left hemisphere 19.6
2290 Female, age 72, unknown 19.4
2481 Female, age 94, left hemisphere 18.9
2288 Male, age 75, left hemisphere 18.8
1854 Male, age 80, left hemisphere 18.4
2846 Female, age 79, unknown 18.2
1781 Male, age 74, unknown 16.8
2289 Male, age 61, right hemisphere 16.5
Claustrum
nTPM: 15.0
2392 Female, age 94, both hemispheres 18.5
2284 Female, age 91, both hemispheres 17.4
2491 Male, age 75, both hemispheres 16.4
2198 Male, age 80, both hemispheres 15.8
2568 Male, age 61, both hemispheres 15.2
2196 Female, age 79, unknown 14.3
1956 Male, age 74, unknown 14.1
2645 Female, age 72, unknown 12.1
2292 Female, age 85, both hemispheres 10.9
Globus pallidus, externus
nTPM: 15.6
2772 Female, age 79, unknown 26.1
2395 Male, age 75, both hemispheres 15.6
1996 Male, age 80, right hemisphere 13.6
2567 Female, age 72, unknown 12.2
2646 Male, age 61, right hemisphere 10.7
Globus pallidus, internus
nTPM: 16.4
1818 Male, age 74, unknown 24.4
2287 Male, age 75, right hemisphere 18.2
2037 Male, age 80, right hemisphere 17.3
2483 Female, age 94, right hemisphere 16.2
2778 Female, age 91, both hemispheres 13.8
2566 Female, age 72, unknown 12.9
2111 Female, age 85, right hemisphere 12.2
Nucleus accumbens
nTPM: 19.9
1856 Female, age 91, right hemisphere 26.5
2824 Male, age 61, right hemisphere 24.0
2286 Male, age 75, left hemisphere 21.5
1806 Female, age 85, left hemisphere 19.2
2698 Female, age 72, unknown 18.4
1783 Male, age 74, unknown 17.5
2391 Female, age 94, left hemisphere 16.3
2732 Male, age 80, right hemisphere 15.9
Nucleus basalis of Meynert
nTPM: 15.6
2393 Male, age 80, right hemisphere 18.2
2484 Female, age 94, left hemisphere 17.1
2821 Male, age 75, both hemispheres 17.1
2569 Male, age 61, both hemispheres 10.2
Nucleus of the diagonal band
nTPM: 20.6
1812 Female, age 91, both hemispheres 22.4
1979 Male, age 74, unknown 21.8
2029 Male, age 61, right hemisphere 21.0
2775 Male, age 80, right hemisphere 20.0
2195 Female, age 85, both hemispheres 17.5
Olfactory tubercle
nTPM: 21.4
2487 Female, age 94, left hemisphere 22.2
2856 Male, age 75, right hemisphere 22.1
1998 Female, age 91, both hemispheres 21.3
1846 Male, age 80, right hemisphere 20.2
Putamen
nTPM: 17.7
1937 Female, age 91, right hemisphere 22.8
1838 Male, age 80, right hemisphere 20.2
1829 Male, age 74, unknown 17.7
2466 Female, age 79, unknown 17.7
2647 Male, age 75, left hemisphere 16.4
2482 Female, age 94, left hemisphere 16.1
2489 Female, age 72, unknown 13.0
Septal nuclei
nTPM: 18.3
2009 Female, age 91, both hemispheres 21.3
2629 Female, age 94, right hemisphere 20.6
2031 Female, age 72, unknown 20.1
2199 Male, age 80, right hemisphere 18.4
1960 Male, age 74, unknown 17.0
2394 Male, age 61, left hemisphere 16.3
2059 Female, age 85, both hemispheres 14.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.6
Samples: 246

Max nTPM: 28.4
Min nTPM: 3.1
Std nTPM: 2.9
Median nTPM: 5.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 28.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 19.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 17.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 17.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 15.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 15.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 15.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 14.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 14.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 14.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 13.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.9
Samples: 246

Max nTPM: 34.8
Min nTPM: 3.2
Std nTPM: 3.7
Median nTPM: 7.1
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 34.8
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 29.1
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 27.9
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 27.2
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 20.6
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 19.4
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 17.6
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 16.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 14.6
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 14.2
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 13.3
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Brain - Putamen (basal ganglia)
Average nTPM: 6.6
Samples: 205

Max nTPM: 44.2
Min nTPM: 2.7
Std nTPM: 4.2
Median nTPM: 5.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 44.2
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 31.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 22.7
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 19.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 18.3
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 17.7
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 14.9
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 14.1
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 13.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 12.5
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 11.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 37.0
FF:10164-103B2 76 years, female 37.0
Globus pallidus
Scaled Tags Per Million: 16.4
FF:10175-103C4 60 years, female 18.1
FF:10161-103A8 76 years, female 14.8
Nucleus accumbens
Scaled Tags Per Million: 22.1
FF:10037-101F1 23-56 years, mixed 22.1
Putamen
Scaled Tags Per Million: 45.9
FF:10176-103C5 60 years, female 45.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.3
Pig sample Sample description nTPM
Caudate
nTPM: 12.5
Samples: 4

Max nTPM: 13.3
Min nTPM: 11.7
Sample A Female 13.3
Sample B Female 11.9
Sample C Male 13.2
Sample D Male 11.7
Putamen
nTPM: 13.4
Samples: 4

Max nTPM: 18.4
Min nTPM: 10.0
Sample A Female 10.0
Sample B Female 13.7
Sample C Male 18.4
Sample D Male 11.3
Septum
nTPM: 12.2
Samples: 4

Max nTPM: 13.3
Min nTPM: 11.3
Sample A Female 11.9
Sample B Female 12.1
Sample C Male 11.3
Sample D Male 13.3
Ventral pallidum
nTPM: 11.3
Samples: 4

Max nTPM: 13.2
Min nTPM: 9.4
Sample A Female 13.2
Sample B Female 11.6
Sample C Male 10.9
Sample D Male 9.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 37.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 35.6
Samples: 4

Max nTPM: 38.0
Min nTPM: 32.3
Sample A Male 35.7
Sample B Male 32.3
Sample C Female 38.0
Sample D Female 36.3
Septum
nTPM: 31.8
Samples: 4

Max nTPM: 34.7
Min nTPM: 28.5
Sample A Male 34.7
Sample B Male 29.5
Sample C Female 28.5
Sample D Female 34.4
Ventral forebrain
nTPM: 37.9
Samples: 4

Max nTPM: 41.6
Min nTPM: 33.4
Sample A Male 38.8
Sample B Male 37.8
Sample C Female 33.4
Sample D Female 41.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
70218890 Antisense, RP_050524_01_E05, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.2
70218890 Antisense, RP_050524_01_E05, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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